Xenorhabdus poinarii: XPG1_2187
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Entry
XPG1_2187 CDS
T03805
Symbol
ycbB
Name
(GenBank) putative L,D-transpeptidase YcbB
KO
K21470
L,D-transpeptidase YcbB
Organism
xpo
Xenorhabdus poinarii
Brite
KEGG Orthology (KO) [BR:
xpo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xpo01002
]
XPG1_2187 (ycbB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xpo01011
]
XPG1_2187 (ycbB)
Peptidases and inhibitors [BR:
xpo01002
]
Cysteine peptidases
Family C82
XPG1_2187 (ycbB)
Peptidoglycan biosynthesis and degradation proteins [BR:
xpo01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
XPG1_2187 (ycbB)
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Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
CDG21842
UniProt:
A0A068R3J9
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All DBs
Position
complement(2105470..2107170)
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AA seq
566 aa
AA seq
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MAKNTVRLLKVSFISSALVVSEGVFANPKTGLPTNDTQLLSAEQKKENPLISLDKTLPGS
PVFSVDENRKKLQSWLPQQIKPIFFERLVALYTDNKMKPLWSDEKAIKQFENQLVEMALA
GFQPQFENWLVQLHSPELSDMGRDVILSDAMLGYLHFISHVNQKGTLWLYAKSPYKIELP
PSPLINTWQQHISNNNTLSHVTNLLPDHFMYENMRKEMLNQLANKSPWPEFTFQGTLRPG
QRSEHVITLRKILARSDGGASSVAKSDSKVYDKELIVAVKRFQALHGLSADGVIGKATKV
WLNMTPQTRARIMALNIQRLRIIPGDILTGILVNIPNYSLFYYLDGKEALRSKVVVGRPG
RKTPIMSNELNNVVINPPWNVPTSMTRKDIAPRAMRDPSYFSTRGYTVFSSWRSDAKVIH
PSSIDWNIITPSRFPYRIRQAPGPTNSLGRFKFNMPNSEAIYLHDTPNQASFSREMRAVS
SGCVRVNKAPELANMLLGDAGWDKAKVSGSLKTWSTKYVNIPKKIPVFLYYQTAWVDEEG
KPQYRADIYDYDVNARQHSASLSKIL
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaatacggtcagattactgaaagtttctttcatcagtagcgcgttagtcgta
tcagaaggcgtttttgcaaatccaaaaacggggctaccaacaaacgatacgcaactatta
tcagcagaacaaaaaaaagaaaacccccttatttcgttggataagacgctaccgggttct
ccagtattttctgtggatgaaaataggaaaaagttgcaatcttggctgccgcaacaaata
aaaccgatattctttgagcgcttagttgctttgtatactgacaataaaatgaaaccatta
tggtcagatgaaaaagccattaaacagtttgagaatcagttggttgaaatggcactggcg
ggttttcagccccaatttgaaaattggttggtacaactacactctcctgaattaagtgat
atggggcgtgatgttattttatctgatgccatgttaggttatctccattttatcagtcac
gttaatcaaaaaggaacgttgtggctatatgctaaatcgccttataaaattgagttgcca
ccttctcctttaatcaatacatggcaacagcatatcagtaataataataccttatctcat
gtgacgaatttattgccggatcacttcatgtatgaaaatatgcgaaaggagatgttgaat
caattagcgaataaaagcccatggcctgaatttacttttcaagggacgttaagacctgga
caacgtagtgaacatgttatcacattaaggaaaatattggctcgctcagatgggggggca
tcatcggttgctaaatccgatagtaaggtttatgacaaagaattaattgtggccgtaaaa
cgctttcaagctttgcatggactatcagccgatggcgtcatcggtaaagcaactaaagta
tggttaaatatgacaccgcaaacccgtgcccgtattatggcattaaatattcaacgatta
cgaattatccctggagatattcttaccgggattttagtgaatattcctaattactcactt
ttctattatttagatggcaaagaagcattaaggtctaaagttgtcgtggggcggcctgga
cgaaaaactcctatcatgagtaatgagttgaataatgtcgttatcaacccgccgtggaat
gtgcctaccagtatgacgcgaaaagatattgccccaagagcaatgcgtgatcccagttat
tttagtacgcgtggttatacggttttttccagttggcgttccgatgccaaagtgattcat
ccttcatcgattgactggaatatcataacgccgagtcgtttcccttatcgtatcaggcaa
gcacctgggccaacaaattcattggggcgttttaagtttaacatgccaaattcagaagcc
atttatttacatgatactcccaatcaagcatcctttagccgggaaatgcgagcggttagc
tctggttgtgtacgtgtcaataaagcacctgagctggctaatatgttattaggcgatgcg
ggatgggataaagctaaggtgagtggttcattgaaaacatggtcaacaaaatatgttaat
atccctaaaaaaatcccggtatttctctattatcaaactgcctgggttgatgaggaaggg
aaaccacaatatcgagcagatatctatgattatgatgtcaatgcaagacaacattcagcg
tcgttgtcaaagattttgtga
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