Xenorhabdus poinarii: XPG1_3485
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Entry
XPG1_3485 CDS
T03805
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xpo
Xenorhabdus poinarii
Pathway
xpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XPG1_3485 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xpo03021
]
XPG1_3485 (rho)
03019 Messenger RNA biogenesis [BR:
xpo03019
]
XPG1_3485 (rho)
Transcription machinery [BR:
xpo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
XPG1_3485 (rho)
Messenger RNA biogenesis [BR:
xpo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XPG1_3485 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
CDG23121
UniProt:
A0A068R871
LinkDB
All DBs
Position
complement(3440900..3442159)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
FDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQDELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNEEFFDFMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtatctgagttgattactctcggcgaaaat
atggggctggaaaacctggctcgtatgcgtaagcaggacatcattttctctattctcaaa
cagcatgcgaaaagtggagaggatattttcggcgatggtgtgctggagatattgcaggat
ggatttggtttcctccgttccgcagacagttcttaccttgcaggccccgatgatatctac
gtttctcctagccaaatccgccgttttaacctccgtaccggtgacaccatttcaggtaaa
atccgcccacccaaagagggtgaacgctattttgctctgctgaaagttaatgaagttaac
ttcgataagcctgaaaatgctcgcagtaagatcctgtttgaaaacttaactccacttcat
gccaacaaccgcttgcgcatggaacgcggtaatggatcgactgaagatttgacggctcgc
gttctggatctggctgcgccaattggtcgtggtcagcgtggcctgattgttgcaccaccc
aaagcgggtaagacgatgttactacagaatattgcagctaacattgcccataactaccct
gattgcgttctgatggtgttgctgattgatgagcgtccagaagaagtcaccgaaatgcag
cgtttggtcaaaggtgaggttattgcttcaacctttgatgaaccggcttcccgccacgtt
caggtagccgaaatggttatcgaaaaagcgaagcgtttggttgaacataagaaagacgtt
attatcctgctggattctatcacccgcctggctcgtgcctataacaccgtggttccagct
tccggcaaagtgttgacggggggggtagatgcgaatgcgctgcatcgtccgaaacgtttc
tttggtgctgcccgtaacgttgaagaaggcgggagtttgaccattatcgcgactgcgttg
gttgatactggctccaagatggatgaagttatttacgaagaatttaaaggtacaggtaac
atggaattacacctgtcccgtaagattgctgaaaaacgtgtcttcccagcgattgattac
aaccgctcagggacacgtaaagaagagctgctcacgacacaggatgagctacagaaaatg
tggatcttacgtaagatcattcatccgatgggtgaaattgatgcgatggagttccttatc
aacaaactggctatgacgaagacaaacgaagaatttttcgactttatgaaacgttcatag
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