Xanthomonas prunicola: MUG10_03105
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Entry
MUG10_03105 CDS
T08368
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
xpr
Xanthomonas prunicola
Brite
KEGG Orthology (KO) [BR:
xpr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xpr03009
]
MUG10_03105 (rlmD)
Enzymes [BR:
xpr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MUG10_03105 (rlmD)
Ribosome biogenesis [BR:
xpr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MUG10_03105 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
RrnaAD
PCMT
Methyltr_RsmB-F
MTS
Methyltransf_11
TRAM
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_23
UPF0020
Methyltransf_15
Methyltransf_12
PrmA
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
USJ01237
LinkDB
All DBs
Position
complement(645483..646817)
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AA seq
444 aa
AA seq
DB search
MARTRNRFDRTPFQTAITDLSHDGRGVARRDGEGGKVTFISGALPGELVRAEPTARSRHF
DEAKTVEVLEASPQRVAPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQ
AVLPALTGDNWGYRRKGRFSVRRVEKKDKTLIGFRELDPRFVADLSVCYTVIPQIGEKIP
LLAALVEGMDGKRDIPQIEFIAGDDAVALTIRHLQPLSERDQQAWVAFAQEHGFAIFLQP
GGVDSVHPLWPQEVPLSFRLPQWEVELAFRPLDFIQVNASLNQKMIAHALALLDAKPDDR
VLDLFCGLGNFTLPLARLVREVVGVEGDAGLVARAKENAQRNGLVNAQFYAADLTQDQRN
AAWMRQGLDKLLLDPPRSGALEVLQQLPLKKFERIVYVSCHPGSLARDAGYLVNEQGFTL
VSAGAMDMFPHTAHVESIAVFERR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
gtggccagaaccagaaaccgtttcgaccgtacccccttccagaccgccatcaccgacctg
agccatgacggccgcggggtggcgcgccgcgacggcgagggcggcaaggtcaccttcatc
agcggcgccttgccgggcgagttggtgcgtgccgaacccaccgcccgcagccgtcatttc
gatgaggccaagacggtggaggtgctggaggcatccccgcagcgcgtcgccccgcgctgt
ccgcatttcggcgtctgcgccggttgcgtcttgcagcatctggaggaatcgcagcagatc
gtcgcaaaacaacgcgtactgatggacaaccttgaacgtatcggtcatgtcaccccgcag
gccgtgctgcctgcgctgaccggcgacaactggggttatcggcgcaagggccggttctcg
gtgcgtcgtgtggagaagaaagacaagaccttgatcggctttcgcgagctcgacccgcgg
ttcgtggccgatctgtctgtttgctacaccgtgatcccgcagatcggcgagaagatcccg
ctgctggccgcgctggtcgaaggcatggacggcaagcgcgacatcccgcagatcgaattc
attgccggcgacgatgcggtggcattgaccattcggcatctgcagccgcttagcgagcgc
gaccaacaggcctgggttgcatttgcccaggagcacgggtttgcgatcttcctgcagcct
ggtggcgtggacagcgtgcatccgctgtggccgcaggaagtgccattgtcgttccgcctg
ccgcaatgggaggtggagctggcattccggccgctggacttcatccaggtcaacgcctcg
ctcaatcaaaagatgatcgcgcacgcgctggcgctgctggatgccaaacccgacgatcgc
gtacttgacctgttctgtggactgggcaacttcaccctgccgctggcgcgcctggtgcgt
gaggtcgtgggtgtggagggcgacgccggactcgtggcgcgggcgaaagagaatgcccag
cgcaatggtctggtcaatgcgcagttctacgccgcggatctgacccaggatcagcgcaac
gctgcctggatgcgtcagggcttggacaagctgttgctggatccgccgcgctcgggcgcg
ttggaagtgctgcagcaactgccgctgaagaagttcgagcgcatcgtctatgtgagctgc
catccgggctcgctggcacgcgacgccggctatcttgtcaacgagcagggctttacgctg
gtgtcggcgggcgcgatggatatgttcccgcacaccgcgcacgtggaaagcattgcggtg
tttgagaggcggtga
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