Xanthomonas prunicola: MUG10_17000
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Entry
MUG10_17000 CDS
T08368
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
xpr
Xanthomonas prunicola
Pathway
xpr02020
Two-component system
xpr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xpr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MUG10_17000
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MUG10_17000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xpr03021
]
MUG10_17000
Transcription machinery [BR:
xpr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MUG10_17000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
HTH_38
HTH_IclR
Sigma70_r4
HTH_23
Sigma70_r4_2
HTH_11
HTH_28
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
USI99702
LinkDB
All DBs
Position
complement(3865504..3866901)
Genome browser
AA seq
465 aa
AA seq
DB search
MTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASDTAVESSPSASTEEPQ
REEAAPAERDDDWSQDELQWTGSGSGGSFDDDESGDAAERVAESETLADHLLWQLHLSPL
SPRDRQIGAMLIDALDEDGYLREPLSAILETLALGAVVDEADVLTVLHQIQRFDPVGVGA
RTLGECLALQLAVLDPATPGRELALQIVAGPLERLPRSGVAGLAHELKRSTADVEQAVQL
VRSLDPRPGKQIGDLSQDTYVVPDCVIWRQRGVWRASLAGRSQPKVTIHRGYENLIRSCG
ESDAGYLRGQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFGAQALRPLTLREIAG
ELGLHESTISRAISRKYVRTPRGTIALRSFFASGIDTDSGGEASSTAIQAMIRRLIDAEN
PRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRIA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgcaactgcgtcaggccatcaagctattgcagatgtccaccacggagctggaa
gtggaaattgccgaagcagtggaaaccaatccactgctggaatgggccgacgaagccgcg
catgcggccagcgacacggcggtggaatcctcgccgtcagcgtccaccgaagagccccag
cgcgaagaagccgcgcctgccgagcgcgacgacgactggtcgcaggacgaactgcagtgg
accggctcgggcagcggcggcagtttcgacgacgacgagtccggcgatgccgccgagcgc
gtcgccgaatccgaaacactcgccgatcatctcttgtggcaactgcatctgtcgccactg
tcgccacgcgaccgccagatcggcgcgatgctgatcgacgcgttggacgaagacggctac
ctgcgcgaaccactgtcggccattctcgaaaccctggcgctgggcgcggtggtggacgaa
gccgacgtgctcaccgtcttacaccagatccagcgcttcgacccggtcggcgtgggggcg
cgcacgctgggtgaatgcctggcgctgcaactggccgtgctcgacccggccactccgggc
cgcgagctggcattgcagatcgtcgccggcccgctggaacggctgccgcgtagcggcgtg
gccggcctggcccacgagctcaagcgctccactgccgatgtcgaacaggcggtgcaattg
gtgcgctcgctggacccgcgcccgggcaagcagatcggcgacctgtcgcaggacacctac
gtggtgccggactgcgtgatctggcgccagcgcggtgtctggcgggcctcgctggccggc
cgttcgcagcccaaggtcaccatccaccgcggctacgagaacctgatccgcagttgcggc
gagtccgacgccggctacctgcgcggccagctgcaggaggcgcgctggctgctcaagagc
ctggaggcgcgcggcgagaccctgctacgggtggtgcgctgcctgctgcaacatcaggcc
gggttcctggaattcggtgcgcaggcgctgcgcccgctgaccctgcgcgagatcgccggc
gagctcggcctgcacgaatccaccatttcccgcgccatctcccgcaaatacgtgcgcacc
ccgcgcggcaccatcgcgctgcgttcgttcttcgcctccggcatcgacaccgacagcggc
ggcgaagcctccagcacggccattcaggccatgatccggcgcctgatcgatgcggaaaac
ccgcgcaaacccttgtctgacgccaagctggcagatctgctgaaaacatccggcgtacca
gtggcgcggcgcaccgttgcgaagtatcgtgaggccatgaacatttccgcctcccacgaa
cgcgtacgcatcgcctga
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