Xanthomonas rydalmerensis: QN244_01545
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Entry
QN244_01545 CDS
T10161
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
xry Xanthomonas rydalmerensis
Brite
KEGG Orthology (KO) [BR:
xry00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xry03019
]
QN244_01545 (hrpB)
Enzymes [BR:
xry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QN244_01545 (hrpB)
Messenger RNA biogenesis [BR:
xry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QN244_01545 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
HA2_N
Flavi_DEAD
HA2_C
Motif
Other DBs
NCBI-ProteinID:
WOS53740
LinkDB
All DBs
Position
complement(356610..359261)
Genome browser
AA seq
883 aa
AA seq
DB search
MTSAVFPIDPLLPQIRDSLAAHPRLVLEAPPGAGKTTQVPPALLDAPWLQGRRIVMLEPR
RVAARSAATFMARQRGEAPGETVGYRIRFENKVSARTRIEVVTEGILTRMLQDDPMLDGV
GALLFDEFHERHLAADLGLALALDVQAQVREDLRIVVMSATLDGERLAQFLDAPRLSSAG
RSFPVEIAHFPARREESLEAQARRAVEHVLQQHPGDVLVFLPGQREIGRVQAALEAAGVG
GGAVAGIAPGDGASGMTPAGTASGVTPAGTALDAPSSGAARHLLPEGEGSGVEVLPLHGE
LPVEQQSKVLQPDPQGRRRVVLATNVAESSVTLPGVRVVIDAGLAREPHYDPNSGFSRLD
VTAIAQSSADQRAGRAGRVASGWAYRLWPQSQRLEAQRRAEILQVELAGLGLELAAWGND
GLRFVDPPPVGALAAARELLQRLGALGTNGAITASGRRMLALGTHPRLAAMLLAANDARA
QALACDLAALIEARDPLRQGGDALAARWRALAAFRRGRVPHDANRGALGAIDAAAKQWRR
RLRSEAAAPDSVEAHELGDLLAHAFPDRIGTRHPSDPLRYQLANGRSVRLFEHSDLRGEP
WLVAAELRHEAKDALLLRAAPVDETYLRAQFPQRFAQEDVVRWDAERRALSALRETRFDR
IVLDSRPAGRVEPAQAAAALTEAVRELGLQALPWSEGLTQWRARVAGLRQWMPELDLPDL
GDAALLDSLDDWLRPAFAGKTRLDALSEDELGEALKARLPWDRRQAIDRHAPVRVAVPSG
MERRIDYSLDHAGQPQPPVLAVKLQELFGLADTPRIADGRVPLLLHLLSPGGRPLQVTQD
LRNFWSSTYPEVKKEMKGRYPRHPWPDDPWTATASHRAKPRGT
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgccgtgtttccgatcgatccgctgctgccgcagatccgcgacagcctcgcc
gcccatccgcgcctggtgctggaagccccgcccggcgccggcaagaccacccaggtgccg
ccagcgctgctcgacgcgccctggctgcaaggccggcgcatcgtgatgctggaaccgcgc
cgcgtcgccgcgcgcagcgccgcgaccttcatggcccggcagcgcggcgaagcgccgggc
gagaccgtgggctaccgcatccgcttcgagaacaaggtgtccgcgcgtacccgtatcgag
gtggtcaccgagggcatcttgacccgtatgctgcaggacgacccgatgctcgacggggtc
ggtgcgctgctgttcgacgaattccacgagcgccacctggccgcggacctgggcctggcg
ctggccctggacgtacaggcgcaggtgcgcgaggacctgcgcatcgtggtgatgtcggca
acgctggacggcgagcgtctggcgcagttcctggatgctccgcggctgtccagcgccggg
cgcagtttcccggtggagatcgcgcacttcccggcgcgacgcgaggagtcgctggaagcg
caggcccggcgtgcggtcgagcatgtgctgcagcagcatccgggcgatgtgctggtattc
ctgcccggacagcgcgagatcgggcgggtgcaggcggcgctggaagcggcgggtgtcggc
ggtggtgcggtggcgggcatagcgccaggagatggcgcatcgggcatgaccccagccggc
accgcctctggcgttaccccagctggcaccgccttggacgcaccctcatccggcgctgcg
cgccaccttctcccggagggagaagggagcggggtggaggtgttgccactgcatggcgag
ttgccggtggagcaacagagcaaggtgctgcagcccgatccgcaggggcgacgacgcgtg
gtgctggcgaccaatgtcgccgagtcctcggtgacactgcccggggtgcgcgtggtgatc
gatgccgggctggcgcgcgagccgcactacgatcccaacagcggcttctcgcggctggac
gtgaccgccatcgcccagtcatcggccgaccagcgcgccggtcgcgccggccgcgtcgcc
agtggctgggcctaccggctgtggccgcagtcgcaacgcctggaggcgcaacgccgcgcc
gagatcctgcaggtggaactggccgggctagggctggagctggcggcctggggcaacgat
ggcctgcgcttcgtcgatccgccaccagtcggtgcgctggctgccgcccgcgagctgctg
cagcggctcggcgcgctcggcacaaacggcgccatcaccgccagcggccggcgcatgctc
gcgctgggcacgcatccgcggctggcggcgatgctgctggcggccaacgatgcgcgcgcg
caggcgctggcctgcgacctcgccgccctgatcgaagcgcgcgatccgctgcgccagggc
ggcgatgcgctggccgcgcgctggcgtgccctggccgcgttccgccgcggccgcgtgccg
cacgacgccaaccgcggcgcgctgggggcgatcgacgcggcggccaaacagtggcggcgg
cgcctgcgcagcgaggccgccgcgccggacagcgtggaggcgcacgaactcggcgatctg
ctggcgcatgccttccccgaccgcatcggtacgcgtcaccccagcgatccgctgcgctac
cagttggccaacggccgcagcgtgcgcctgttcgagcacagcgacctgcgcggcgagccc
tggctggtcgccgccgaactgcgccacgaggccaaggacgcactgctgctgcgcgccgcg
cccgtggacgagacctatctgcgcgcgcagtttccgcagcgcttcgcgcaggaagacgtg
gtgcgctgggatgccgagcggcgcgcgctgagcgcgctgcgcgagacacgcttcgatcgc
atcgtgctcgacagccgccccgctggccgcgtcgagccggcgcaggcggccgcggcattg
accgaggcggtgcgcgaactcggactgcaggcgctgccctggagcgagggtctgacgcag
tggcgcgcgcgggtggcgggactgcgccagtggatgccggagctggacctgcccgacctg
ggcgatgccgcgctgctggacagcctcgacgactggctgcgcccggcctttgccggcaag
acccggctcgatgcgctgagcgaggacgagctgggcgaggcgctgaaagcgcggctgccg
tgggacaggcgccaggccatcgaccgccacgcaccggtgcgcgtcgcagtgccgtcgggc
atggagcggcgcatcgactacagcctggaccatgccgggcagccgcagccgccggtgctg
gcggtcaagctgcaggagctgttcggcctggccgacaccccgcgcatcgccgacggccgt
gtgccgctgctgctgcacctgctctcgcccggcgggcgcccgctgcaggtcacccaggac
ctgcgcaatttctggtccagcacctacccggaagtgaagaaggaaatgaagggtcgttac
ccgcgccacccctggccggacgacccctggaccgccaccgccagccaccgcgccaagccg
cgcggtacctag
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