Xanthomonas rydalmerensis: QN244_03165
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Entry
QN244_03165 CDS
T10161
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xry Xanthomonas rydalmerensis
Pathway
xry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QN244_03165 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xry03019
]
QN244_03165 (rhlB)
Enzymes [BR:
xry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QN244_03165 (rhlB)
Messenger RNA biogenesis [BR:
xry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QN244_03165 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WOS54031
LinkDB
All DBs
Position
734212..735975
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AA seq
587 aa
AA seq
DB search
MSDKPLTDVTFSAFELQPALLAGLESAGFTRCTPIQALTLPVALPGRDVAGQAQTGTGKT
LAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSELGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPS
DEEKLTLLLGLLSRSEGARTMVFVNTKAFVERVARSLERNGYRVGVLSGDVPQKKRETLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTAELLVALPRTPRAVVEGEAAEADDDDQSIGEIFR
EARAQREADEQRRGGGRGKPGGSRGGPGGRGESSRSADGKPRRPRTPRPADAGTAAADGS
APAAAAPAPAPKPPRAAPAEGAAPAVEGERAPRKRRRRRGGRPLEGAEGAPAGNGSATPA
PAAPAKPVQVVATPVKAARQADRSAAAKNDSFLTRLGRKLRSLVSSS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatgtgactttttccgcgttcgaactgcagcccgcgctg
ctcgcaggcctcgaaagcgccggcttcacccgctgtaccccgatccaggcgctgaccctg
ccggtggcccttcccggccgcgacgtggccggccaggcccagaccggcaccggcaagacc
ctggcgttcctggtggcggtgatgaaccgcctgctcagccgcccggcgctggccgaccgc
aaaccggaggatccgcgcgcgctgatcctggccccgacccgcgaactggccatccagatc
cacaaggatgcggtgaagttcggctccgagctgggcctgcgcttcgccctggtctacggc
ggcgtggactacgacaagcagcgcgaactgctgcagcagggcgtggacgtgatcatcgcc
acccccggccgcttgatcgactacgtcaagcagcacaaggtggtgtcgctgcacgcctgc
gagatctgcgtgctcgacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggcacccggcagaccctgctgttctcggcc
accctcagccaccgcgtgctggagctggcctacgaacacatgaacgagccggaaaagctc
gtggtcgagaccgagagcatcaccgccgcgcgggtgcgccagcgcatctacttcccctcc
gacgaggagaagctgaccctgctgctgggcttgctgtcgcgcagcgagggtgcgcgcacc
atggtgttcgtcaacaccaaggcgttcgtcgagcgggtggcgcgttcgctggagcgcaac
ggctaccgggtcggcgtgctgtccggcgacgtgccgcagaagaagcgcgagaccctgctc
aaccgcttccagaagggccagttggagatcctggtggccaccgacgtggccgcgcgcggc
ctgcacatcgacggggtcaagtacgtctacaactacgacctgccgttcgacgccgaggac
tacgtgcaccgcatcggccgcaccgcgcggctgggcgaggagggcgacgcgatcagcttc
gcctgcgagcgctacgcgatgagcctgccggacatcgaggcctacatcgagcagaagatc
ccggtcgagccggtcaccgccgaactgctggtggcgctgccgcgcaccccgcgtgcggtg
gtggagggcgaggccgccgaggccgatgacgacgaccagagcatcggcgagatcttccgc
gaggcccgcgcccagcgcgaggccgacgaacagcgtcgtggcggcggtcgcggcaagccc
ggcggcagccgcggcggcccgggcggccgtggcgagtcctcgcgcagcgccgacggcaag
ccgcggcgtccgcgcacgccgcgtccggccgacgccggcaccgccgccgcggacggcagc
gcgccggccgctgccgcgccggcgcccgctcccaagccgccgcgtgctgcgccggccgag
ggtgctgcgccggcggtcgaaggcgagcgtgcgccgcgcaagcgccgccgccgtcgcggc
ggacgtccgctggaaggcgccgagggcgcaccggccggcaacggcagcgccacgccggcg
cccgccgccccggccaagccggtgcaggtcgtggccaccccggtcaaggccgcgcgccag
gccgatcgcagtgcggcggcgaagaacgattcgttcctgacccgcctgggccgcaagctg
cgctcgctggtctccagctcctga
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