Xanthomonas rydalmerensis: QN244_06865
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Entry
QN244_06865 CDS
T10161
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
xry Xanthomonas rydalmerensis
Pathway
xry02020
Two-component system
xry02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xry00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
QN244_06865
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QN244_06865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xry03021
]
QN244_06865
Transcription machinery [BR:
xry03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QN244_06865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
HTH_23
Sigma70_r4
HTH_Crp_2
HTH_11
HTH_AsnC-type
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
WOS54703
LinkDB
All DBs
Position
complement(1675859..1677304)
Genome browser
AA seq
481 aa
AA seq
DB search
MKARLQTSLGQHLVMTPQLRQAIKLLQMSSAELEVEIAEAVESNPLLEWSEDAAPTLDVT
SHGSAEGEVEVTPPAGDTLDDVPQHNGDEWSTAESAWSGGSGGSFDDDDLGSAAERVAEP
DTLIDHLLWQLHLSPLSARDRSIGAALIDALDDDGYLREPLTAIAETLRPDIAAEEDEIL
TVLHQIQRFDPAGIAARSLGECLTLQLDTLPEDTPGLALARTIATGPLERLPRSGVAGLA
HELKRPTAEVDTAVALLRSLDPRPGKRIGELGSDTYVVPDCVVWRQRGVWHAALSAHAQP
KVTIHRGYERLIRQCGESDAGYLRGQLQEARWLLKSLEARGETLLKVTRCLLKQQAGFLE
FGEQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPLRAFFASGIDTDSGGEAS
STAIQAMIRRLIDAENPRKPLSDAKLADLLKSAGVPVARRTVAKYREAMNISASHERVRI
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcacggctgcagacatcgctgggacagcacctggtcatgacgccgcagttgcgg
caggcgatcaagctgttgcagatgtccagcgccgagctggaagtggagatcgccgaggcg
gtggagagcaatccgctgctggaatggtccgaggacgccgcgcccaccctggatgtgact
agccacggcagcgccgagggcgaggtcgaggtcacgccgccggccggcgacaccctggac
gacgttccgcagcacaacggcgacgaatggtccactgccgaatcggcctggagcggcggc
agcggcggctcgttcgatgacgacgacctgggcagcgcggccgaacgcgtggccgaaccg
gacaccttgatcgaccacctgctgtggcagttgcacctgtcgccgctgtccgcgcgcgac
cgcagcatcggcgcggcgctgatcgacgcgctcgacgacgatggttacctgcgcgagccg
ctgaccgcgatcgccgagaccctgcgcccggacatcgccgccgaagaggacgagatcctc
accgtgctgcaccagatccagcgcttcgacccggccggcatcgccgcgcgcagcctgggc
gagtgcctgaccctgcagctggacaccctgcccgaagacacaccggggctggcgctagca
cgcaccatcgccaccggaccgctggaacggctgccgcgcagcggcgtggccggcctggcg
cacgaactcaagcgcccgacggcggaggtcgacaccgcggtcgcgctgctgcgctcactg
gacccgcgcccgggcaagcggatcggcgagctgggcagcgacacctacgtggtgcccgac
tgcgtggtctggcgccagcgcggggtgtggcatgcggcgctgtccgcgcacgcccagccc
aaggtcaccatccaccgcggctacgagcggctgatccgccagtgcggcgaaagcgacgcc
ggctacctgcgtgggcaactgcaggaagcgcgctggctgctgaagagcctggaggcgcgc
ggcgagaccctgctcaaggtgacccgctgcctgctgaagcagcaggccggtttcctggag
ttcggcgaacaggcgctgcggccgctgaccctgcgcgagatcgccggcgaactgggcctg
cacgagagcaccatctcccgcgccatcgcccgcaaatacgtgcgcaccccgcgcggcacc
atcccgctgcgcgccttcttcgcctcgggcatcgacaccgacagcggcggcgaggcctcc
agcaccgcgatccaggcgatgatccgtcggctgatcgacgcggagaatccgcgcaagccg
ctttctgacgccaagctggccgacctgctgaaaagtgccggcgtccctgtagcgcgccgc
accgtggcgaagtatcgtgaggccatgaacatttccgcctcccacgaacgcgtccggatc
ggctag
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integrated database retrieval system
