Xanthomonas rydalmerensis: QN244_09475
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Entry
QN244_09475 CDS
T10161
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xry Xanthomonas rydalmerensis
Pathway
xry03018
RNA degradation
Brite
Enzymes [BR:
xry01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QN244_09475
Messenger RNA biogenesis [BR:
xry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QN244_09475
Ribosome biogenesis [BR:
xry03009
]
Prokaryotic type
rRNA processing factors
QN244_09475
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WOS55191
LinkDB
All DBs
Position
complement(2278658..2282176)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPTAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTAEMYGDAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQMHTPH
YEVTRLRENELGEESTKPSYQRGTPRKLPVHALTKAQLNIPAPAVTNVKHSQPAPVREPA
EEPVAAPAPAPVVAPTPVAPPATGVVGWLKRIFGAGDNPAAAPAAAEPAQRQRPQDGNRN
RNDRGDRNDRNARRNGGQGGNAARGNGNGGNARRDERRNGNGNGATAPAAQQNQQPKAPR
NEQAAQQAKPQQQPQTPKPPKQQQPQNPPRQPKPQQDPAQAAVQGDKPPRQPRADEAVAK
QQAAPVATAPVTPMQDATTLAAAAVAGGASAASQEPAVVVEAAAAPVQQAPAAAAAGIDE
RESAAETAQAVPAGEGAEGEDGTGDAGGRRRRGRRGGRRRRRGNGEAGAAGDTAGLDDAD
LDAGDSDGESAPAPSRSQPEFDFDDDGATDAPAPKPPVQEKREPQEKRERRERPAAVSAA
APASDAAQAPAPITVDPVPAPATAPMQPSAPADTVIASPAPAAAAQGVSDAAVAHANTVV
AAPAAPAPVAETTPVAQETVTTDRAAAPAERATPAVAPTTQQPQAVTTAVEQPTATAAKA
PVAEPDAADTTTTVEDPAGVTAPAEAAVVPPSAAPAVTAAPTASVEPRAEEAAPAKPAYV
PVQTTLLDAFADAPAQAPYGGAAAAAASTESVSATPASDDTATSVAAPAAQAQVVSADEA
AKKERAATAAQSAAHAPHAADKADGDEHKDRS
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggcagaagaactgcgtgtggccatcgtggac
ggccagaccctgtacgacatcgacatcgagcagccgtccaaggaacagaagaagtccaac
atctacaagggccgcatcacccggctcgagccctcgctggaagcggccttcgtcgaatac
ggcggcgagcgtcacggcttcctgccgctgaaggaaatctcccgcgattacttccaggcc
ggcgtcgaccacaacaaggcgacgatccgcgaactgctgcgcgagggccaggaagtcgtg
gtccaggtggacaaggaagagcgcggcaacaagggcgctgccctgaccacgttcatctcc
ctggccggccgctacatggtgctgatgccgaactcgcccaccgccggcggcgtctcgcgc
cggatcgagggcgaagaccgcgccgcgctgaaggaagcgctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgatgccgaagaactgcag
tgggacctggactacctgctgcaggtgtggaagtcgatcgccgaggccgccctggccaag
ccggcgccgttcctgatctaccaggaatcgcggctgatcatccgcgccctgcgcgactac
ctgcgcgccgacatcggcgagatcctggtcgacaccgccgagatgtacggcgacgcccag
gagttcatgcagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaatcgcttccagatcgagtcgcagatcgaggccgcctacgagcgcagt
gtgcgcctgccgtccggcggctcgatcgtggtcgaccagaccgaggcgctgaccgcggtg
gacgtcaactcctcgcgcgccaccaagggcagcgacatcgaggacaccgcgttccagacc
aacctggaggcggccgaagaggtcgcgcgccagttgcgcctgcgcgacctcggcggcctg
gtggtgatcgacttcatcgacatggcctccaacaagcaccagcgcgaggtcgagaaccgc
ctgcagaacgcgctcaagtacgaccgcgcgcgggtgcagatcggccgtatctcgcgcttc
ggcctgctggagatgagccgccagcgcctgcgtccgtcgctgggcgagtccagccagatc
gtctgcccgcgctgcgatggccacggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtcgccgaagagcacgcgatgaaggagaacaccggacaggtgctggtgcag
gccccggtggagatcgccaactacctgctcaacgagaagcgccgcgcgctcagcgagatc
gagaagcgccacgacgcgccgatcgtcatcgtcgccgacgagcagatgcacaccccgcac
tacgaagtgacccgcctgcgcgagaacgaactgggcgaggaaagcaccaagcccagctac
cagcgcggcaccccgcgcaagctgccggtgcatgcgctgaccaaggcgcagttgaacatt
ccggcgcctgcggtgaccaatgtgaagcactcgcagccggccccggtgcgcgaaccggcc
gaggaaccggtggccgcgccggcaccggcgccggtcgtcgcgccgaccccggtcgcaccg
ccggccaccggcgtggtcggctggctgaagcgcatcttcggcgccggcgacaacccggcc
gccgccccggccgccgccgagccggcacagcgccaacgcccgcaggacggcaaccgtaac
cgcaacgaccgtggcgatcgcaacgaccgcaacgcgcgccgcaacggcggccagggcggc
aatgccgcccgcggcaacggcaacggcggcaatgcgcgccgcgacgaacgccgcaacggc
aacggcaatggcgccactgcgccggccgcgcagcagaaccagcagcccaaggcaccgcgc
aacgagcaggccgcgcagcaggccaagccgcaacagcagccgcaaacgcccaagccgccg
aagcaacagcagccgcagaacccgccgcgccagccgaagccgcagcaggatccggcacag
gccgccgtgcagggcgacaagccgccgcgtcagccgcgcgccgacgaggccgtggccaag
cagcaggccgcgcccgtcgccaccgcacccgtgacgccgatgcaggacgccaccaccctg
gccgccgctgcggtcgccggtggcgcgagcgccgcgtcccaggagccggcagtggttgtc
gaagccgccgccgcaccggtgcaacaggcgcctgccgccgcagcagccggcatcgatgaa
cgcgaaagcgccgcggaaaccgcgcaggctgtgcccgccggcgaaggcgccgagggcgag
gacggcaccggcgacgccggtggccgccgtcgtcgcggccgtcgcggtggacgtcgtcgt
cgtcgtggcaatggcgaagccggtgccgccggcgataccgccgggctggatgatgccgat
ctggatgccggcgacagcgacggcgaaagcgcgccggcgccgagccgcagccagccggag
ttcgacttcgacgacgacggtgccaccgacgcacccgcacccaagccgcccgtgcaggaa
aagcgcgagccgcaggaaaagcgcgagcgccgtgagcgtccggctgccgtcagtgcagcg
gcaccggccagcgacgcagcccaggcccccgcgccgatcaccgtcgaccccgtgcctgcg
ccagccaccgcaccgatgcagccgtccgcgcctgccgacaccgtgatcgcatcgcccgcg
ccagccgctgcggctcagggcgtcagcgatgcggccgtcgcccatgccaacacggtggtg
gcggcaccggcagcaccggcgccggtcgccgagaccacgccggtcgcacaggagactgtg
accaccgaccgcgccgcggcaccggccgaacgcgccacgcctgccgtcgccccgaccacg
cagcaaccgcaggcagtcaccactgccgtcgagcaaccgaccgccaccgccgccaaggcg
ccggtcgcggagccggacgccgcggataccacgaccacggtcgaggatccggcgggcgtc
accgcgccggcggaagctgccgtcgttccgccgagcgcagcgccggccgtcaccgccgcg
cccaccgcttccgtggagccgcgtgccgaagaggctgccccggccaagccggcttacgtc
ccggtgcagaccactctgctcgacgccttcgccgatgcaccggcgcaggctccgtacggt
ggtgcagcagcggccgcagcgtcgaccgagagcgtatcggccacgccggcaagcgacgac
accgcaacgtccgttgccgccccggctgcccaggcgcaggtcgtgtctgcagacgaggcg
gcgaagaaggaacgcgccgccactgccgcgcaatccgcagcgcatgcgccgcatgccgcg
gacaaggcggacggcgacgagcacaaggatcgcagctga
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