Xanthomonas rydalmerensis: QN244_13065
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Entry
QN244_13065 CDS
T10161
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xry Xanthomonas rydalmerensis
Pathway
xry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QN244_13065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xry03019
]
QN244_13065
03009 Ribosome biogenesis [BR:
xry03009
]
QN244_13065
Enzymes [BR:
xry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QN244_13065
Messenger RNA biogenesis [BR:
xry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QN244_13065
Ribosome biogenesis [BR:
xry03009
]
Prokaryotic type
rRNA helicases
QN244_13065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WOS51900
LinkDB
All DBs
Position
complement(3111956..3113923)
Genome browser
AA seq
655 aa
AA seq
DB search
MSQDTPAPLLFADLGLSPAVMKAVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKT
AAFALPILSRLDFAQRKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSELRTLVLDEADEMLRMGFIDDVEAVLKKL
PDSRQVALFSATMPPAIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALT
RILEVEPFDAMIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLD
VLVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGML
RAIERATRQPIEEMQLPSVDAVNDQRVTRFMEKISETIASGGIDMYRDLLQKFEAEKNVP
MVEVAAALARLLQGDTPLLLAPDRPRAPQGERFERRERTERTERTERPERPRFEPKFERE
PRAPRRDDGERPARPAPAARGEDFDYHRDVGSFEAPRRDKAPKAPRGAPEVGMETYRIEV
GHQHGVKPANIVGAIANEAGLESKYIGRIDIHDDHSVLDLPADMPRELLTHLKKVWVSGQ
QLQMRKLEGDDAGSALFKPKFARTGKPGGKPNAAGPRPAGRFAADRPPRKGPPKR
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagatacccccgcgccgctgctgttcgcagatctcggcctctcccctgctgtg
atgaaggcggtcgccgacgtcggctacgagtcgccttcgccgatccaggccgccaccatc
ccggcgctgctgaccggccgcgacctgctcggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccgatcctgtcgcggctggatttcgcccagcgcaagccgcaggcg
ctggtgctggcgcccacgcgcgaattggcgatccaggtggccgaggcgttccaccgctat
gccgcggcgatccccggctttcaggtgctgccggtgtacggcggccagccctacgtgcag
cagctgtcggcgctcaagcgcggcgtgcacgtggtggtgggcacccccgggcgggtcatc
gaccatctcgaccgcggcaccctggacctgtccgaactgaggacgctggtgctggacgaa
gccgacgagatgctgcgcatgggcttcatcgacgatgtcgaggcggtgctgaagaagctg
cccgactcgcgccaggtggcgctgttctcggcgaccatgccgccggcgatcaagcgcatt
gcgcagacctatctgaacgacccggccgaggtgatcatcgcctccaagaccaccacgtcg
gccaacatccgccagcgctactgggcggtgagcgggctgcacaagctcgacgcgctgacc
cggatcctggaggtcgagccgttcgacgcgatgatcatcttcgcgcgcaccaaggccggc
accgacgaactggcgcagaagctgcaggcgcgcggcctggccgcggcggcgatcaacggc
gacatccagcaggcgcagcgcgagcgggtgatccagcagctcaaggacggcaagctcgac
gtcctggtcgccaccgacgtggccgcgcgcggcctggacgtggagcggatcagccacgtg
ctgaactacgacatcccctacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgtgccgggcgcagcggcgaggcgatcctgttcgtcagcccgcgcgagcgcggcatgttg
cgcgcgatcgagcgtgccacccggcagccgatcgaggaaatgcagctgcccagcgtcgac
gcggtcaacgaccagcgcgtgacccgcttcatggagaagatcagcgagaccatcgccagc
ggtggcatcgacatgtaccgcgatctgctgcagaagttcgaggccgagaagaacgtgccg
atggtggaagtggcggcagcgctggcgcgcctgctgcagggcgatacgccgctgctgctg
gccccggaccgtccgcgtgccccgcaaggcgaacgcttcgagcgccgcgaacgcaccgag
cgcaccgagcgcaccgagcgcccggaacgtccccgtttcgagccgaagttcgagcgcgag
ccgcgtgcgccgcgccgcgacgacggcgagcgtccggcgcgtccggccccggccgcgcgc
ggcgaggatttcgattaccaccgcgacgtcggcagcttcgaggcgccgcgccgcgacaag
gcgccgaaagcgccgcgcggcgcgccggaagtgggcatggagacctaccgcattgaggtc
ggccaccagcacggggtcaagccggccaacatcgtcggcgcgatcgccaacgaagccggg
ctggagagcaagtacatcggccgcatcgacatccatgacgatcattcggtcctggacctg
ccggcggacatgccgcgcgagctgctgacgcacctgaagaaggtctgggtgtccggccag
caactgcagatgcgcaagctcgagggcgacgatgccggcagcgcgctgttcaagcccaag
ttcgcccgtaccggcaagcccggcggcaagcccaatgccgccggcccgcgcccggccggc
cgcttcgccgccgaccgcccgccgcgcaaggggccgccgaagcgttga
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