Xanthomonas rydalmerensis: QN244_13215
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Entry
QN244_13215 CDS
T10161
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xry Xanthomonas rydalmerensis
Brite
KEGG Orthology (KO) [BR:
xry00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xry03016
]
QN244_13215
Enzymes [BR:
xry01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QN244_13215
Transfer RNA biogenesis [BR:
xry03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QN244_13215
Prokaryotic type
tRNA splicing ligases
QN244_13215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WOS51929
LinkDB
All DBs
Position
complement(3146344..3147564)
Genome browser
AA seq
406 aa
AA seq
DB search
MNTEQYDVIAQPGAAPIKLWTRGVPLEDEARQQLQNIAKLPFIHRWIAVMPDVHLGKGAT
VGSVVPTIGAIVPAAVGVDIGCGMIAARTSLVASDLPDNLAPIRSAIERAVPHGRTPGAR
DKGAWQTPPGAAVDGWAQLASDFALICERHPRLRKTNNLQHLGTLGTGNHFVEMCLDEAQ
RVWFMLHSGSRGVGNAIGNHFIQLAKEEMRRWMINLPDQDLAYLPEGSQYYGDYVFAVDW
AQRYARINREIMMRSVVEAVRTVIAKPFEAQAEAVNCHHNYVSREHHFGKDVFVTRKGAV
SARKGELGIIPGSMGAKSFIVRGLGNADSFHSCSHGAGRVMSRTEARRRISVDEHAKATA
HVECRKDQDVVDESPAAYKPIEAVMAAQRDLVEIVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccgagcagtacgacgtcatcgcgcagccgggagcggcgccgatcaagctgtgg
acccgcggcgtgccgctggaggacgaggcgcgccagcagctgcagaacatcgccaagctg
cccttcatccatcgctggatcgcggtgatgccggacgtgcacctcggcaagggggccacc
gtcggctcggtggtgccgaccatcggcgcgatcgtgcctgctgcggtgggcgtggacatc
ggctgcgggatgatcgcggcgcgtacctcgctggtcgccagcgacctaccggacaacctg
gcgccgatccgcagcgcgatcgagcgcgcggtgccgcatgggcgcacgcccggcgcgcgc
gacaagggcgcgtggcagacgccgccaggcgcggcggtggatggctgggcgcagcttgcc
agcgatttcgccctgatctgcgagcgccatccgcgcctgcgcaagaccaacaacctgcag
catctcgggaccctcggtaccggcaaccacttcgtggagatgtgcctggacgaggcgcag
cgggtctggttcatgctgcactccggctcgcgcggcgtgggcaatgcgatcggcaaccac
ttcatccagctggccaaggaggaaatgcggcgctggatgatcaacctgccggaccaggac
ctggcctacctgccggaaggcagtcagtactatggcgactacgtgttcgcggtggactgg
gcgcagcgctatgcgcgcatcaaccgcgagatcatgatgcgcagcgtggtcgaggcggtc
cgcacggtcatcgccaagccgttcgaggcgcaggccgaagcggtgaactgccaccacaac
tacgtcagccgcgagcaccacttcggcaaggacgtgttcgtgacccgcaagggggcggtg
agcgcgcgcaagggcgaactgggcatcattcccggcagcatgggcgccaagagcttcatc
gtgcgcgggctcggcaacgcggacagctttcatagctgcagccacggcgccgggcgggtg
atgagccgcaccgaggcgcgtcgccgtatcagcgtcgatgagcacgccaaggcgaccgcg
cacgtggagtgccgcaaggaccaggacgtggtggacgagtcgccggcggcctacaagccg
atcgaggcggtgatggccgcacagcgcgacctggtggagatcgtgcatacgctgcggcag
gtggtgtgcgtcaagggttag
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