Xanthomonas rydalmerensis: QN244_16200
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Entry
QN244_16200 CDS
T10161
Name
(GenBank) rhamnogalacturonan lyase B N-terminal domain-containing protein
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
xry Xanthomonas rydalmerensis
Brite
KEGG Orthology (KO) [BR:
xry00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
QN244_16200
Enzymes [BR:
xry01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
QN244_16200
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Gene cluster
GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-ProteinID:
WOS52481
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All DBs
Position
complement(3851746..3853620)
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AA seq
624 aa
AA seq
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MLSPPGFGIGAMDSRIGFERANRRADACPGVPRVVPRAQAMKTTNAGGHPGSRRCFSSIV
MCILLFAAVGATAQRGVAAPMPDAPESARAARFGLSERADAYVVDTGAGLTFAVRRIAGH
NGLQSAGGLSSLRWHGVEYQDPAKDSHVNSGFAGLYADAGSVAVEARQLDADTIRVTVRS
GDLVHYYLARRGEPRIYMADRFGSEPKPGLLRFVVRVPWALLPHGPEPADLHGTDRTIEA
HDVFARPDGQTRSKHYSNMRLLDWRFFGATGAHVGMWMVRDDNEGGSGGPFYRSLLDQGT
VDQELTYIVNYGEGQTEPFRTGILDAYTLIFTDGAPPGPVDTAWFAGAGLDGYVPPAARG
GVAGTARGLDPAFAYTVGFASAQAQYWTGVGADGRFERSGMLPGVYRVTLYKNELAVAQG
EAAVAAGRTVAAGTLRADDPDAVPALWRIGRWDGSPREFLNGDKVTTMHPSDVRMASWRT
APFTVGASSAAQDFPAYQWQDVNNALHVRFVLARMPAAPPTLRIGITTAAFHGRPVPAIG
DWQAAVPTASQQPTSRTLTVGTYRGNNTVYRFVIPLSALKVGSNELTLSVASGQHGQGFL
SPGVSYDAIDLVQENVPAGVAAAR
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcgccccctggtttcggcattggcgcaatggacagtcggattggcttcgagcgt
gcgaatcgacgtgccgacgcgtgtcccggcgtccccagggtggtgccgcgcgcgcaggcg
atgaaaacgacgaacgcaggtgggcacccaggatcgcgtcggtgcttctcctccatcgtg
atgtgcatcctgctgtttgccgcggtcggcgccacggcccagcgcggcgttgcggcgccg
atgccggacgcgccggaatccgcgcgcgcggcgcggttcggactcagcgaacgcgcggat
gcctatgtcgtcgacaccggtgcgggcttgaccttcgccgtgcggcgcatcgccggccac
aatgggttgcagagcgcgggcggtctgtcctcgctgcgctggcatggtgtcgagtaccag
gatccggccaaggacagccacgtcaactcgggcttcgccggcctctacgcggacgccggg
tcggtcgccgtcgaggcgcgacagctcgatgccgacacgatccgggtgacggtgcgctcg
ggtgatctggtccattactacctggcccggcgcggcgagccgcgcatctacatggccgac
cgcttcggcagcgaaccgaagcccgggctgctgcgcttcgtcgtgcgcgtgccctgggcg
ctgctcccgcatggccccgaaccggcggacctgcacggcaccgatcgcaccatcgaggcg
catgacgtgtttgcccgtccggacgggcagacccgctcgaaacactattccaacatgcgg
ctgctcgactggcgtttcttcggcgcgaccggtgcgcatgtcgggatgtggatggtgcgc
gacgacaacgaaggcggctccggcggcccgttctaccgcagcctgctggaccagggcacc
gtcgaccaggagctgacctacatcgtcaattacggcgaaggccagaccgagccgttccgg
accggcatcctcgatgcctacacgctgatcttcaccgatggcgcgccgcccgggccggtc
gataccgcgtggttcgccggtgcgggcctggacggttacgtcccgccggcggcacgcggc
ggggtggccggtacggcgcgcggccttgatcctgcctttgcctacacggtgggtttcgcc
tcggcccaggcgcagtactggaccggcgtcggcgcggacgggcgcttcgaacgcagcggc
atgctgccaggcgtctaccgggtgacgctctacaagaacgaactggccgtcgcgcagggc
gaggccgctgtggcggcaggccgtaccgtggccgccgggacgctgcgcgccgacgatccg
gacgccgtgccggcgttgtggcggatcgggcgctgggacggctcgccgcgcgagttcttg
aacggcgacaaggtgacgaccatgcacccgtcggacgtgcgcatggcgagctggcggact
gcgccattcacggtcggtgcgtcgtcagcggcgcaggactttcccgcgtatcaatggcag
gacgtgaacaacgcgctgcacgtgcgcttcgtcctcgcgcgcatgccggccgcgccgccg
acgctgcggatcggcatcaccaccgccgcctttcatgggcgccccgtgcccgcgatcggc
gattggcaggcggcggttcccacggcgtcgcagcaaccgacctcgcgcacgttgacggtc
ggcacctatcgcggcaacaacaccgtctatcgcttcgtcatcccgttgtccgcgttgaag
gtcgggagcaacgagctgacgttgagcgtcgccagcggtcagcacgggcagggtttcctc
agtccgggcgtttcgtacgatgcgatcgatctggtccaggagaacgtacctgcgggcgtc
gctgcggcgcgctga
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