Xanthomonas rydalmerensis: QN244_16810
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Entry
QN244_16810 CDS
T10161
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xry Xanthomonas rydalmerensis
Pathway
xry03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xry00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QN244_16810 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xry03021
]
QN244_16810 (rpoC)
03400 DNA repair and recombination proteins [BR:
xry03400
]
QN244_16810 (rpoC)
Enzymes [BR:
xry01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QN244_16810 (rpoC)
Transcription machinery [BR:
xry03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QN244_16810 (rpoC)
DNA repair and recombination proteins [BR:
xry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QN244_16810 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WOS52592
LinkDB
All DBs
Position
complement(3969256..3973473)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLTARQEHGDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFIESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANIAEVKRAYDNR
AVELHAKVKVRITETVIDEEGNRSKKTSIVDTTIGRALLAEILPEGLPFALANTELTKKN
ISRLINSSYRQLGLKDSVVFADKLMYTGFAYATRAGVSIGIDDMLIPSEKKGILGEAEQE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEPDCGTTDGLTMTPIVEGGDVVEPLRDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEQWVAKLEEAGVQSVKVRSTITCESAFGVCARCY
GRDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSIK
FNNLKSVEHANGSLVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQSVAN
WDPHNHPIVSEVAGFIRFIDFIDGVTVIEKTDELTGLASREITDPKRRGTQAKDLRPIVR
IVDAKGNDLTIPGTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFE
GEHVAKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGSSKFLNGEQAERQRVIEENARLAARNELPAKYDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTSDTLRGLKENVIVGRLIPAGTGLAYHSLRRRNASGLTESE
MQTLSGGSAEPAVEAPAPTAAGSEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgttcgtggtccttcggcgaagtgaagaag
ccggaaaccatcaactaccggaccttcaagcccgagcgcgacggcctgttctgcgccgcc
atcttcggcccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgagaagtgcggcaccgaagtgaccctggccaaggtgcgccgcgag
cgcatgggccacatcgacctggcttcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtgaccgagccgggcctgaccgccctggagcgccgccagctgctg
accgaagagcagtacctgaccgcgcgccaggagcacggcgacgacttcgacgccgccatg
ggcgccgaggcggtgtacgagctgctgcgcaccatcgacctgcagtcggaaatgacccgc
ctgcgcgaagagatcgccagcaccggttcggaaaccaagctcaagcgcctgaccaagcgc
atcaagctgatcgaggccttcatcgagtccggcaaccgtccggagtggatggtgatgacc
gtgctgccggtgctgccgccggatctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgatctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctcgagctgaacgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgccgcggccgtgccatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactactccggccgttcggtgatcgtggtcggcccgacc
ctgcgtctgcacgagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgcggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaggtgatccgcgagcacccg
gtgctgctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgtcgctggaagcgcagctggaagcg
cgcgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgctgggcctgtattacatgagccgcgccctggagaacaag
aagggcgagggcatggtgttcgccaacatcgccgaagtgaagcgcgcctacgacaaccgt
gcggtcgaactgcacgccaaggtcaaggtccgcatcaccgagacggtgatcgacgaggaa
ggcaaccgcagcaagaagacctcgatcgtggacaccacgatcgggcgcgcgctgctggcc
gagatcctgccggaaggcctgccgttcgcgctggccaacaccgagctgaccaagaagaac
atcagccgcctgatcaactccagctaccgtcagcttggtctgaaggacagcgtcgtgttc
gccgacaagctgatgtacaccggcttcgcctacgcgacccgcgccggcgtgtcgatcggc
atcgacgacatgctgatcccgtcggagaagaagggcatcctcggcgaagccgagcaggaa
gtgctggaaatccaggagcagtaccagtccggtctggtcaccgccggcgagcgctacaac
aaggtcgtggacatctggtcgcgcaccaacgagcgcatcgccaaggcgatgatggacacc
atcggcaccgagaaggtggtcaacgccaagggcgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggcgcgcgtggttcgcaggcgcagatccgtcagctg
gccggcatgcgcggcctgatggcccgcccggacggctcgatcatcgagacgccgatcaag
gcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagaccgccaactccggttacctgacccgtcgcctg
gtcgacgtggcgcaggacgtggtgatcaccgagccggattgcggcaccaccgacggcctg
accatgaccccgatcgtggaaggcggcgacgtggtcgagccgttgcgcgaccgcgtgctc
ggccgcgtggtggccgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaacaccctgctcgacgagcagtgggtggccaagctggaagaggccggcgtgcagtcg
gtcaaggtccgctcgaccatcacctgcgaatcggcgttcggcgtgtgcgcacgctgctac
ggccgcgacctggcccgtggccacctggtcaacatcggcgaagcggtgggcgtcatcgcc
gcgcagtcgatcggcgagccgggtacccagctgaccatgcgtaccttccacatcggcggc
gcggcttcgcgtgcggcggcggtggacaacatcacggtcaagaccaccggttcgatcaag
ttcaacaacttgaagtcggtcgagcacgccaacggttcgctggtggcggtgtcgcgttcg
ggcgaactgtcggtgctcgacggccacggccgcgagcgcgagcgctacaagctgccgtac
ggcgccaccatcaccgccaaggacggcgacgccgtcaaggccggccagtcggtggcgaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggtttcatccgcttcatcgac
ttcatcgacggcgtcaccgtcatcgagaagaccgacgagctgaccggcctggcctcgcgc
gaaatcaccgatccgaagcgtcgcggcacccaggccaaggacctgcgcccgatcgtgcgc
atcgtcgatgccaagggcaacgacctgaccatcccgggcaccgatctgccggcgcagtac
ctgctgccgccgcgctcgatcgtcaacctgcaggatggcgccgcggtcggcgtcggcgac
gtggtcgcgaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgtggcggatctgttcgaagcgcgcaagccgaaggatccggcgatcctggccgagcgc
tcgggcatcatcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatgggtcggagcacgaagagctgatcccgaagtaccgccagatcatcgtgttcgaa
ggcgaacacgtggccaagggcgaaaccgtggtggacggcgagccgagcccgcaggacatc
ctgcgtctgctgggcgtcgagccgctggccgcgtacctggtcaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtcatcacccggcagatg
ctgcgcaaggtcgagatcaccgaccagggcagcagcaagttcctcaatggcgagcaggcc
gagcgccagcgcgtcatcgaggagaacgcccgcctggcggcccgcaacgaactgccggcc
aagtacgacccggtgctgctgggcatcaccaaggcctcgctggcgaccgagtcgttcatc
tcggccgcgtcgttccaggagaccacccgcgtgctcaccgaggcggcggtccgcggcacc
agcgacacgctgcgcggtctgaaggaaaacgtgatcgtgggccgtctgatcccggccggt
accggcctggcgtaccacagcctgcgccgtcgcaatgccagcggcctgaccgagtcggaa
atgcagaccctgtccggcggcagcgccgagccggcggtcgaagctcccgcgccgacggct
gccggcagcgaagagtaa
DBGET
integrated database retrieval system
