Xanthomonas sacchari: SB85_01425
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Entry
SB85_01425 CDS
T03566
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
xsa
Xanthomonas sacchari
Pathway
xsa03410
Base excision repair
xsa03430
Mismatch repair
xsa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SB85_01425
03430 Mismatch repair
SB85_01425
03440 Homologous recombination
SB85_01425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xsa03400
]
SB85_01425
DNA repair and recombination proteins [BR:
xsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SB85_01425
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SB85_01425
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SB85_01425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
DUF2399
Motif
Other DBs
NCBI-ProteinID:
AJC44628
UniProt:
A0AA46SY32
LinkDB
All DBs
Position
359673..361406
Genome browser
AA seq
577 aa
AA seq
DB search
MSSSARIVRRPAAAAAGPWHEATLPLLRRIYAARGAHDSGLAQPKLAQLLPPDALSGIDA
AVELLAEAIAAGKRILVVGDFDCDGATACAVAVRGLRLLGAAQVLHAVPNRMVHGYGLSP
ALVAELAPLQPDLLVTVDHGIACHAGVAAAKALGWQVLVTDHHLPGPALPPADAIVDPNL
AGDAFPSKMLAGVGVIFYVLLALRRHLRVRGAFAAAPPDLSVLLDLVAVGTVADLVPLDP
NNRALVSAGLRRLQRGEGCLGLRALIEASGRDPARLSASDIGFALAPRLNAAGRLEDMAL
GIELLLCEDPQQARTIAATLEEINAERRAVQQQMTDEAEAVVAQALLAAPEQPPVAVCLF
DAQWHPGVIGLVASKMKDRLHRPVIAFAPAEPGSTQLRGSARSIPGFHIRDAMAAVEAQR
PGLMEKFGGHAMAAGLSLPQDALAEFEEVFRAHALASLDAELLQAELLSDGVLEPHELDH
RHAEALRQGGPWGQGFPEPLFDGEFEVLQWRVLKERHLKLSLRCPGRAAPLNAIHFNGWH
GREPGRRVHIAYRLVADDYRGGDAVQLVVEHCLPLDG
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgagttccagcgcgcgcatcgtgcggcggcccgcggcggccgcggccggcccgtggcat
gaggccaccttgccgctgctgcggcgcatctatgccgcgcgcggcgcccacgacagcggc
ctggcgcagcccaagctggcgcaactgctgccgccggatgcgctgagcggcatcgacgcc
gcagtggaattgctggccgaagccatcgccgcgggcaagcgcatcctggtggtcggcgat
ttcgactgcgacggcgccaccgcctgcgcagtggcggtgcgcgggctgcgcctgctcggc
gccgcgcaggtgctgcacgcggtgcccaaccgcatggtccatggctacgggctgtcgccg
gcgctggtcgcggaattggcgccgttgcagccggacctgctggtgacggtggaccacggc
atcgcctgccatgccggcgtcgccgcggccaaggcgctgggctggcaggtgctggtcacc
gaccaccacctgccgggtccggccttgccgccggccgacgccatcgtcgatccgaacctg
gccggcgacgccttcccgagcaagatgctggccggcgtcggggtgatcttctacgtgctg
ctggccttgcgccggcacctgcgcgtgcgcggcgcgttcgcggcggcaccgccggacctg
agtgtgttgctggacctggtcgcggtcggcaccgtcgccgacctggtgccgctggatccc
aacaaccgcgcgctggtctcggccggtttgcgccggttgcagcgtggcgaaggttgcctc
ggcctgcgcgccttgatcgaagccagcggtcgcgacccggcgcggctcagcgccagcgac
atcggcttcgccctggcaccgcggctcaacgccgccggccgcctcgaggacatggccctg
ggcatcgagttgttgctgtgcgaggacccgcaacaggcgcgcacgatcgccgcgacgctg
gaggagatcaacgccgagcgccgcgccgtgcagcagcagatgaccgacgaggccgaagca
gtggtggcgcaggcgctgctggccgcgcccgagcagccgccggtggcggtatgcctgttc
gatgcgcagtggcatcccggtgtgatcggtctggtcgcctcgaagatgaaggaccgcctg
catcggccggtgatcgccttcgccccggccgagccgggcagcacccagttgcgcggctcg
gcgcgttcgatccccggcttccacatccgcgacgcgatggcggcggtggaggcgcagcgg
ccgggcctgatggagaagttcggcggccatgccatggccgcgggcctgagcctgccgcag
gacgcgctggccgagttcgaagaggtgttccgcgcgcatgcgctggccagcctggacgcg
gaactgctgcaggccgaactgctcagcgacggcgtgctggaaccgcacgaactcgaccat
cgccatgccgaggcgctgcgccagggtggaccatgggggcagggcttccccgagccgctg
ttcgatggcgaattcgaggtgctgcagtggcgcgtgctgaaggagcgccacctcaagctg
agcctgcgctgtcctggccgtgccgcgcccttgaacgcgatccacttcaacggctggcac
ggccgcgaaccgggccgccgcgtgcacatcgcctatcggctggtcgccgacgactaccgc
ggcggcgatgcggtgcaactggtggtggagcactgtctgccgttggatggctga
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