Xanthomonas sacchari: SB85_05580
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Entry
SB85_05580 CDS
T03566
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xsa
Xanthomonas sacchari
Pathway
xsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SB85_05580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xsa03019
]
SB85_05580
03016 Transfer RNA biogenesis [BR:
xsa03016
]
SB85_05580
Enzymes [BR:
xsa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SB85_05580
Messenger RNA biogenesis [BR:
xsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SB85_05580
Transfer RNA biogenesis [BR:
xsa03016
]
Prokaryotic type
tRNA degradation factors
SB85_05580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
DUF7680
KH_PNO1_2nd
S1_2
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
AJC45303
LinkDB
All DBs
Position
complement(1378218..1380326)
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVSDLKESQLELVVAG
TANAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSDWVAPAKNEA
MIAALKEAVGEQLAAAFQVRDKLQRRDAIAAIKKDVLAQLAPRATAENWVAADLAKEFGE
LEYQTMRGSVLSTKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTME
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGNDFVVLS
DILGDEDHLGDMDFKVAGTADGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMAS
ALTTPRAELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEGASAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcaccctcgaaaccggc
gagatcgcccgccaggccggcggtgccgtcatcgtcaagatggacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaaggtcaggacttcttcccgctgacggtc
gactatcaggagaagttctacgccggcggccgcatccccggcggcttcttcaagcgcgag
ggccgtgcgaccgagaaggagacgctgatttcgcgtctgatcgaccgtccgatccgtccg
ctgttcccggaggattacaagaacgaagtgcagatcatcgccacggtgatgtcgatgaac
ccggacatcgacggcgacatcgccgcgctgatcggcgcctcggccgccctgtcgctggcc
ggcaccccgttcaagggcccgatcggcgccgccaaggtcggctacaagaacggcgaatac
atcctcaacccgaccgtgtcggatctgaaggagtcgcagctggagctggtcgtcgccggt
accgccaacgcggtgctgatggtcgagtccgaagccgcgctgctgtcggaagaagtgatg
ctgggcgcggtcaccttcggccaccgcgagatgcagaaggtcatcaacgcgatcaacgag
ctgaccgtcgaagccggcaccaagccgtccgactgggtcgccccggccaagaacgaggcc
atgatcgccgcgctgaaggaagccgtcggcgagcagctggccgccgcgttccaggtgcgc
gacaagctgcagcgccgcgacgccatcgccgcgatcaagaaggacgtgctggcgcagctg
gcgccgcgcgccaccgccgagaactgggtcgctgccgacctggccaaggaattcggcgag
ctggaataccagaccatgcgcggttcggtgctgagcaccaaggtgcgcatcgacggccgt
gcgctggacaccgtgcgcccgatcagcgtgcaggccggcgtgctgccgcgtacccacggc
tcggcgctgttcacccgcggcgagacccaggcgatcgtggtcaccacgctgggcaccgcc
cgcgatggccaggtgatcgacgcggtctccggcgagtacaaggaaaacttcctgttccac
tacaacttccccccctactcggtgggcgagtgcggccgcttcggcgcgcccaagcgtcgc
gaaatcggccacggccgcctcgccaagcgcggcgtgctggcggtgatgccgaccatggaa
gagttcccgtacaccatccgcgtggtctcggaaatcaccgaatccaacggttcctcgtcg
atggcttcggtctgcggttcgtcgctggcgctgatggacgccggcgtgccggtgaaggcg
ccggtggccggtatcgccatgggcctggtgaaggaaggcaacgacttcgtggtgctgtcg
gacatcctgggcgatgaagatcacctgggcgacatggacttcaaggtcgccggtaccgcc
gacggcgtgtccgcgctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggccctggcgcaggccaaggccggccgcctgcacatcctcggcgagatggccagc
gcgctgaccacgccgcgtgcggagctgagcgactacgcgccgcgcctgctgacgatcaag
atccacccggacaagatccgcgaagtgatcggcaagggcggttcgaccatccaggcgatc
accaaggaaaccggcacccagatcgacatccaggacgacggcaccatcgtcatcgcctcg
gtcaacgcgatcgccgcgcaggcggccaagtcgcgcatcgagcagatcacctcggacgtc
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggcgcgttcgtg
accatcctgccgggcaaggacggcctggtgcacgtctcgcagatctccagcgagcgcgtg
gaaaaggtcggcgacaagctgaaggaaggcgacgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgcatccgcctgtcgatgaaggccgtggaagaaggcgagggcgcgtcg
gccgaataa
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