Xanthomonas sacchari: SB85_09790
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Entry
SB85_09790 CDS
T03566
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xsa
Xanthomonas sacchari
Pathway
xsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SB85_09790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xsa03019
]
SB85_09790
Enzymes [BR:
xsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SB85_09790
Messenger RNA biogenesis [BR:
xsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SB85_09790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AJC46021
UniProt:
A0AA46STQ2
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All DBs
Position
2345432..2346805
Genome browser
AA seq
457 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQAQAIPVALEGHDLMAGAQTGTGKTAAFGLPLL
QHLGTSPQSVGPGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSTTIYGGVGMGNQL
DALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEEGIKQLAREFMHDPQEIQATPSNTVADTITHRVHPVDGARKRELLLH
LLAADSRKQTLVFARTKHGADKLTMFLDKSGLKTAAIHGNKSQGQRLRALSDFKAGRITV
LVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLR
AIARMLKREMDIRDVPGFEPVTPIRWGNNNPPDERPGGQRPPRRGSHARRGHGDAPAHAH
AHAGSKKPGGSHADGARRQGQGRRHGNGGGNRPAAPR
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgaatccctgggccttgcgcccttcctgctgcgcgcgctggccgagcagggc
tacgaaacccccaccccgatccaggcgcaggccattcccgtcgccctggaaggccatgac
ctgatggccggcgcgcagaccggtaccggcaagaccgccgcgttcggcctgccgctgctg
cagcacctgggcacttcgccgcagtcggtgggccccggcccgcgcaagccgcgcgcgctg
atcctgaccccgacccgcgaactggccacccaggtccacgacagcctgcgcggctacagc
aagtacctgcgcattcccagcaccaccatctacggcggcgtgggcatgggcaaccagctc
gacgcgctgcgccgcggcgtggacctgctgatcgcctgcccgggccgcctgctcgaccac
ctcgagcgccgcagcgtggacctgtcgggcatcgagatcctggtgctggacgaagccgac
cgcatgctcgacatgggcttcctgccgtcgatcaagcgcatcctcgccaagctgcccaag
cagaaccggcagaccctgctgttctcggccaccttcgaggaaggcatcaagcagctggcc
cgcgagttcatgcacgacccgcaggaaatccaggccaccccgagcaacaccgtggccgac
accatcacccaccgcgtgcatccggtggacggtgcgcgcaagcgcgaactgctgctgcac
ctgctggccgccgactcgcgcaagcagaccctggtgttcgcccgcaccaagcacggtgcc
gacaagctgaccatgttcctggacaagtccgggttgaagaccgcggcgatccacggcaac
aagagccagggccagcgcctgcgcgcattgagcgacttcaaggccggccgcatcaccgtg
ctggtggcgaccgacatcgccgcgcgcggcatcgacatcgaccagttgcccaaggtcatc
aactacgacctgccgatggtcgccgaggactacgtgcaccgcatcggccgcaccggccgc
aacggttcgaccggtgaagcaatttcgctggtggcacaggacgaggccaagctgctgcgc
gcgatcgcacgcatgctcaagcgcgagatggacatccgcgacgtgccgggcttcgagccg
gtcacgccgatccgctggggcaacaacaacccgccggacgagcgtccgggcggccagcgt
ccgccgcgtcgcggcagccacgcccgtcgcggccatggcgatgcgccggcgcacgcgcat
gcgcacgccggcagcaagaagcccggcggcagccacgccgacggcgcccgccgccagggc
cagggccgccgccacggcaacggcggcggcaaccgccccgccgcgccgcgctga
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