Xanthomonas sacchari: SB85_12520
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Entry
SB85_12520 CDS
T03566
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
xsa
Xanthomonas sacchari
Pathway
xsa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SB85_12520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xsa03400
]
SB85_12520
Enzymes [BR:
xsa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SB85_12520
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SB85_12520
DNA repair and recombination proteins [BR:
xsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SB85_12520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF5830
Motif
Other DBs
NCBI-ProteinID:
AJC46464
LinkDB
All DBs
Position
complement(2996171..2996983)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGLEPHLSGRRIHGVILRRPDLRWPIPPEVAEQLPGQRIDGIRRRAKYL
LLDTAVGSALLHLGMSGSLRVLPGDTPPRAHDHVDISLEDGRVLRFNDPRRFGCLLWQAP
GETHPLLAELGPEPLSDAFDGDHLFRLSRGRTAPVKTFLMDQRIVVGVGNIYAAESLFQA
GISPLREAGDVSRARYARLAEAAKAILGYAIQRGGTTLRDFISPDGAPGYFEQELSVYGR
EGEACKRCGRTLRHASIGQRASVWCGHCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactccccgaagtcgaaaccacccggcgcggtctggagccgcatctgtcgggg
cggcgcatccatggggtgatcctgcggcggccggatctgcgttggccgattccccccgag
gtggccgagcaattgcccgggcaacgcatcgacggcattcgccggcgcgccaagtatctg
ttgctggacaccgcggtcggtagtgcgctgctgcatctgggcatgtccggcagcttgcgc
gtgctgccgggcgacacgccgccgcgggcgcacgaccacgtcgacatcagcctggaagac
ggccgggtgctccgcttcaacgacccgcgccggttcggctgcctgctgtggcaggcgccg
ggcgagacccatccgctgctcgccgagctggggccggagccgctgtcggatgcattcgac
ggcgatcatctgttccggctcagtcgcggccgcactgcgccggtcaagaccttcctgatg
gatcagcgcatcgtggtcggggtgggcaacatctacgcggccgagagcctgttccaggcg
ggcatcagtccgctgcgcgaggccggcgacgtctcgcgtgcccgttacgcacgcctggcc
gaggcagccaaggcgatcctcggctatgcgatccagcgcggcggcacgaccttgcgcgat
ttcatcagtccggatggggcgccgggctacttcgagcaggagctgtcggtctacggccgc
gagggcgaggcctgcaagcgctgcgggcgcacgctgcgccatgccagcatcggccagcgc
gccagcgtctggtgtggccactgccagcgctga
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