Xanthomonas sacchari: SB85_13255
Help
Entry
SB85_13255 CDS
T03566
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xsa
Xanthomonas sacchari
Pathway
xsa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SB85_13255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xsa03400
]
SB85_13255
Enzymes [BR:
xsa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SB85_13255
DNA repair and recombination proteins [BR:
xsa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SB85_13255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AJC46578
LinkDB
All DBs
Position
3183140..3186994
Genome browser
AA seq
1284 aa
AA seq
DB search
MNAAPDRDPYLQLPLHGVRLIEASAGTGKTFTLATLFTRLVVERGLRLGQILAVTFTEAA
TQELRRRIRERLALAASLVPDPDRVGAALAATDLATDPSQPTPQQDLPDVALTRAILAAH
LAASTETPAALRRRLQQAAEDIDLAAIFTIHGFCARVLREHALESGQAFAAPQLLTDDRE
LLRDVAADLWRQRAADPAMAEDLVALWPGGPDGMAIDLRELVRHPTLLPAAPVFSAEDGA
VLQQAAQRAGVALAEAFRTHGTACFEAIAAAMDAGVLSKVSYKPDWLTALWHWLDAFAAA
PAADAPPHPKLVKLTAAELAAGTNKKHAERTPASPLGHAIDGYLAALAQLAQWRTQRRIC
LLHALRADAGERLAYLKRQRRVQTYDDLVEGVARALEGPLGAALAQRLRAQYAVALVDEF
QDTDDRQWTIFRKVFAPATADANVVQDDAAIAPSLSTADDTPPLLALIGDPKQAIYGFRG
GDVRTYLAAATDAERAPPLAHNFRSRPALLAAIDALYAQAGYADAFLTDGIAFHPVQPGS
KRVDADLQRNGAPAPSLTVWRAPEPPPPPATAKGPGKPKPWSAGRARELCTAACVAAIRG
WLAEARDGRATLLDRPVQAGDIAVLVRSHGEATRIQQALAAAGIPAVAAGRRSLFATDEA
LELLALLQALLDPGDDGRLRAALATVLIGEDAAAIAALDHDGERHRRWQQQALDWRERWQ
RGGPLALIGDLGAAHGQRLLALVDGERRLTNYLQLAELLQEADTRALGPHGLVDWLARRI
ANADDSDEAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYAGIGRSERSPGRHCVVPAP
QGGRQLQWNTGRSGGESDPAWDTAEAAWKQEQRAEDARLLYVGLTRAEHALWTATGAFPQ
HERTALAPMLRDLDALQAAAAPGAIAIDSTPPPAQLPRLPPEPAPPVPPARVPQRRVLPE
WWVYSFTQLANADAGSDPMASATVPSSGGSDEPAASEPVSAAVEVDMVDRRFVGNRFGVA
MHDVFERCDFAAWRDWHPGQPAPAGQATAIVEALQRGGYAEDELEDGTAMLTALVGNTLT
VALPEATCLAAVPDEQRRNEMEFHFAMRPTRVDALLALLHRFGVAGERQAFGARQRLEGL
MTGLIDLTYQHDGRWYVLDYKSNRLPAYDPDALARAMAHSEYTLQALIYTVALHRWLRFR
LGGAYDYARDFGGVRYLFCRGLDAARDPSPGVHAWRFDPDLIEGVDALFAGAPLEPLSPR
RPQEVPVGERGWGEGTSAHGAPTP
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgcacccgaccgcgacccctacctgcagctgccgctgcacggcgtgcgcctg
atcgaggccagcgccggcaccggcaagaccttcaccctggccaccttgttcacccgcctg
gtggtcgagcgcggcttgcgtctgggccagatcctcgccgtcaccttcaccgaggccgcc
acccaggaactgcgccggcgcatccgcgagcgcctggcgttggcggccagcctggtcccc
gatccagaccgcgtaggagcggctttagccgcgaccgacctcgcgaccgacccatcgcag
ccaaccccgcaacaagacctgcccgacgtcgccctcacccgcgccatcctcgccgcgcac
ctggccgccagcaccgaaaccccagcggccctgcgccgccgcctgcagcaggccgccgag
gacatcgacctcgccgccatcttcaccatccacggcttctgcgcgcgcgtgctgcgcgag
cacgcgctggaaagcggccaggccttcgccgcaccgcaactgctcaccgacgaccgcgaa
ctgctgcgcgacgtcgccgccgacctgtggcggcaacgcgccgccgatccggcgatggcc
gaggacctggtggcactgtggccgggcggtccggacggcatggcgatcgatctgcgcgaa
ctggtgcggcatccgacgctgttgccggccgcgccggtcttttccgccgaggacggcgcc
gtgttgcagcaggccgcgcagcgcgccggcgtggcgctggccgaggcgttccgcacccac
ggcaccgcctgtttcgaagcgatcgccgcggcgatggatgccggcgtgctgagcaaggtc
agctacaagcccgactggctgaccgcgctgtggcactggctggatgccttcgccgcggcg
ccggcggcggatgcgccgccgcatccgaagctggtcaagctcaccgccgccgaactggcc
gccggcaccaacaagaagcacgccgaacgcaccccggcctcgccgctgggccacgccatc
gacggttacctggccgcattggcgcaactggcgcagtggcgcacgcaacgccgcatctgc
ctgctgcacgcgttgcgcgccgacgcgggggagcggctggcctatctcaagcgccagcgc
cgcgtgcagacctacgacgacctggtcgagggcgtggcgcgcgcgctggaaggcccgctc
ggcgccgccctggcgcagcggctgcgcgcgcagtacgcggtggccctggtcgacgaattc
caggacaccgacgaccgtcagtggacgatcttccgcaaggtgttcgccccggcgacggcc
gatgccaacgtggtgcaggacgacgcggcgatcgcgccatcgctgtccacagcggacgac
acgccgccgctgctcgccctgatcggcgaccccaagcaggccatctacggcttccgcggc
ggcgacgtgcgcacctacctggccgccgccacggatgccgaacgcgcgccgccgctggcg
cacaacttccgctcgcgccccgcgctgctggcggcgatcgacgcgctgtacgcgcaggcc
ggctacgccgatgcgtttctcaccgacggcatcgccttccacccggtgcagccgggcagc
aagcgcgtcgatgccgacctgcagcgcaatggcgcaccggccccgtcgctgaccgtgtgg
cgcgcaccggaaccaccgcctccaccggccaccgccaaggggccgggcaagcccaagccg
tggagcgccggccgcgcccgcgagctgtgcaccgccgcctgcgtggcagcgattcgcggc
tggctggccgaggcccgcgacggccgcgccaccttgctcgaccgtcccgtgcaggccggc
gacatcgcggtgctggtgcgcagccacggcgaggccacacgcatccagcaggcgctggcc
gccgccggcattcccgcggtcgccgccggccgccgcagcctgttcgccaccgacgaggcg
ctggaattgctggcgctgctgcaggcgctgctcgaccccggcgacgacggccgcctgcgc
gcggcgttggccaccgtgctgatcggcgaggacgccgcggccatcgccgcgctcgaccac
gacggcgaacgccaccgccgctggcagcagcaggcgctggactggcgcgagcgctggcag
cgcggtggcccgctcgccctgatcggcgaccttggcgccgcgcatgggcagcgcctgctg
gcgctggtcgatggcgagcgccgcctcaccaactacctgcagctggccgagctgctgcag
gaagccgacacccgcgcactcggcccgcatggcctggtcgactggctggcgcggcgcatc
gccaatgccgacgacagcgacgaagcgcagcagctgcgcctggagtcggacgcacgccgc
gtgcagatcgtcaccctgcacaagagcaagggcctggagtatccgctggtgttcctgccc
tacgctggcatcggccgcagcgagcgcagccccggtcgccactgcgtggtgccggcgccg
cagggcgggcgccagttgcagtggaacaccggccgcagcggcggcgaatccgacccggcc
tgggacaccgctgaggccgcgtggaaacaagagcagcgcgccgaggacgcgcgcctgctc
tacgtcggcctgacccgcgccgaacacgcactgtggaccgccaccggcgccttcccgcag
cacgagcgcaccgcgttggcaccgatgctgcgcgatctcgatgccttgcaggccgccgct
gctcccggcgccatcgccatcgacagcaccccgccgccggcgcagttgccgcgcctgccg
cccgagccggcgccgccggtgccgccggcgcgcgtgccgcagcggcgcgtgctgccggag
tggtgggtgtacagcttcacccagctcgccaatgccgatgccggcagcgacccgatggcc
agcgccaccgtgcccagcagcggcggcagcgacgaacccgccgccagcgagccggtcagc
gccgcggtggaagtggacatggtcgaccgtcgcttcgtcggcaaccgcttcggcgtggcc
atgcacgacgtgttcgagcgctgcgacttcgccgcctggcgcgactggcacccgggccag
ccggcgccagcggggcaggccaccgccatcgtcgaagcgctgcaacgcggcggctatgcc
gaggacgaactggaagacggcaccgccatgctcaccgccctggtcggcaataccctcacc
gtggcgctacccgaagccacctgcctggcagcggtgccggacgagcagcggcgcaacgaa
atggaattccacttcgccatgcgcccgacgcgcgtggacgcattgctggcgctgctgcac
cgcttcggcgtggccggcgagcgccaggcgttcggcgcgcggcagcgcctggagggactg
atgaccggcctgatcgacctcacctatcagcacgacggccgctggtacgtgctcgactac
aagtccaaccgcctgccggcctacgaccccgacgccctggcgcgggcgatggcgcatagc
gaatacaccctgcaggcgctgatctacaccgtggccctgcaccgctggctgcgcttccgc
ctgggcggtgcctacgactacgcccgcgacttcggcggcgtgcgctacctgttctgccgc
ggcctcgacgccgcccgcgacccgtcgccgggcgtgcacgcctggcgcttcgacccggac
ctgatcgaaggcgtcgacgccctcttcgccggcgctccgcttgagcccctctccccccgg
cgaccgcaggaagtccccgtgggagagaggggttggggtgagggtacgtccgcccacgga
gcccccaccccgtga
DBGET
integrated database retrieval system
