Xanthomonas sacchari: SB85_18785
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Entry
SB85_18785 CDS
T03566
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xsa
Xanthomonas sacchari
Pathway
xsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SB85_18785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xsa03019
]
SB85_18785
03009 Ribosome biogenesis [BR:
xsa03009
]
SB85_18785
Enzymes [BR:
xsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SB85_18785
Messenger RNA biogenesis [BR:
xsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SB85_18785
Ribosome biogenesis [BR:
xsa03009
]
Prokaryotic type
rRNA helicases
SB85_18785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJC47841
LinkDB
All DBs
Position
unnamed:complement(122072..124030)
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AA seq
652 aa
AA seq
DB search
MSQDTPAPLLFADLGLSPAVMKAVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKT
AAFALPILSRLDFAQRKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PDSRQVALFSATMPPAIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALT
RILEVEPFDAMIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLD
VLVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGML
RAIERATRQPIEEMQLPSVDAVNDQRVSRFMEKISETIAAGGIDMYRDLLQKFEAEKNVP
MVEVAAALARLLQGETPLLLAPDRPRPPQGERFERRERPERGERPDRPRFEPKFEREPRA
PRRDDGERPARPAPAARGEDFDYHRDVGSFEAPRRDKAPKAPRGAPEVGMETYRIEVGHQ
HGVKPANIVGAIANEAGLESKYIGRIDIHDDHSVLDLPADMPRELLTHLKKVWVSGQQLQ
MRKLDGDDAGGAPFKPKFARTGKPGGKPNAAGPRPAGRFAADRPPRKGPPKR
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagatacccccgcgccgctgctgttcgcagatctcggcctctcccctgctgtg
atgaaggcggtcgccgacgtcggctacgagtcgccgtcgccgatccaggccgccaccatc
ccggcgctgctgaccggccgcgacctgctcggccaggcgcagaccggcaccggcaagacc
gccgcgttcgcgctgccgatcctgtcgcggctggatttcgcccagcgcaagccgcaggcg
ctggtgctggcgcccacgcgcgaactggcgatccaggtggccgaggcgttccaccgctac
gccgcggcgatccccggcttccaggtgctgccggtgtacggcggccagccctacgtgcag
cagctgtcggcgctcaagcgcggcgtgcacgtggtggtgggcaccccggggcgggtgatc
gatcacctggaccgcggcaccctggacctgtccgagctgaagacgctggtgctcgacgaa
gccgacgagatgctgcgcatgggcttcatcgacgacgtcgaggcggtgctgaagaagctg
ccggactcgcgccaggtggcgctgttctcggcgaccatgccgccggcgatcaagcgcatc
gcgcagacctatctgaacgacccggccgaggtgatcatcgcctccaagaccaccacctcg
gccaacatccgccagcgctactgggcggtgagcgggctgcacaagctcgacgcgctgacc
cggatcctggaggtcgaaccgttcgacgcgatgatcatcttcgcccgtaccaaggccggc
accgacgagctggcgcagaagctgcaggcgcgcggcctggccgcggcggcgatcaacggc
gacatccagcaggcgcagcgcgagcgggtgatccagcagctcaaggacggcaagctcgac
gtcctcgtcgccactgacgtggccgcgcgcggcctggacgtggagcggatcagccacgtg
ctgaactacgacatcccctacgacaccgaaagctacgtgcaccgtatcggccgcaccggc
cgggccgggcgcagcggcgaagcgatcctgttcgtcagcccgcgcgagcgcggcatgctg
cgcgcgatcgagcgcgccacccgccagccgatcgaggaaatgcagctgcccagcgtcgac
gcggtcaacgaccagcgcgtgagccgcttcatggagaagatcagcgagaccatcgccgcc
ggcggcatcgacatgtaccgcgacctgctgcagaagttcgaggccgagaagaacgtgccg
atggtggaagtggccgcggcgctggcgcgcctgctgcagggcgagacgccgctgctgctg
gccccggaccgtccgcgtccgccgcagggcgagcgtttcgagcgccgcgagcggcccgag
cgtggcgagcgtccggaccgtccccggttcgagccgaagttcgagcgcgagccgcgtgcg
ccgcggcgcgacgacggcgagcgtccggcgcgtccggccccggccgcgcgcggcgaggat
ttcgactaccaccgcgacgtcggcagcttcgaggcgccgcgccgcgacaaggcgccgaaa
gcgccgcgcggcgcgccggaagtgggcatggagacctaccgcatcgaggtcggccaccag
cacggggtcaagccggccaacatcgtcggcgcgatcgccaacgaggccgggctggagagc
aagtacatcggccgcatcgacatccacgacgaccattcggtgctggacctgccggcggac
atgccgcgcgagctgctgacgcacctgaagaaggtctgggtgtccggccagcaactgcag
atgcgcaagctcgacggcgacgatgccggcggcgcgccgttcaagccgaagttcgcccgt
accggcaagcccggcggcaagcccaacgccgccggcccgcgcccggccggccgcttcgcc
gccgaccggccgccgcgcaaggggccgccgaagcgctga
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