Xanthomonas sacchari: SB85_18985
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Entry
SB85_18985 CDS
T03566
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xsa
Xanthomonas sacchari
Pathway
xsa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SB85_18985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xsa03400
]
SB85_18985
Enzymes [BR:
xsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SB85_18985
DNA repair and recombination proteins [BR:
xsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SB85_18985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Cas3-like_C_2
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AJC47873
LinkDB
All DBs
Position
unnamed:169146..172814
Genome browser
AA seq
1222 aa
AA seq
DB search
MPPLPFPVPPLPKSGQFRAHWRAPASSTALAWHIACAASAHRGPLLVVARDNQSAHQLEA
DLHSLLGDDPSLPVVPFPDWETLPYDQFSPHPDIVSQRLAALHRLPTLTQGIVVVPVQTL
MQRVAPLRYIVGGSFDLRVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVYP
MGTDAPLRIELLDEDIDSIRAFDPESQRSLDHVQAVRMLPGREVPMDDVSVERVLTALRE
RFDVDTRRSALYQDLKAGLAPSGIEYYLPLFFQETRSSGAREATATLFDYLGEHVLPLIA
PGVGAAADAFWAQTQARYEQRRHDVERPLLAPEELYQAPDALRERLNGLPRIDVWAADHP
RIDEAQALGDQPLPPLPVAAKDAAPGAALKSFLDHYPGRVLIAADSPGRREALLEVLAAA
ELKPEVLPNFAAFVPSPTGRRWREAPDEGAASARSGTKKAGASASSTVAQTNSTSSRTLT
PTPLPGGEGLDSGAIAARFAIAVAPLDDGFALEEPRIAVLTERQLFPERASQPRRSRRVG
REPEAIIRDLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVA
QLHLISRYSGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRQARAGLALQ
VDRAMYEPFAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFA
AASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKSSKEIKAELEKVAAGSI
DVIVGTHRLLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLN
MAMAGLRDLSIIATPPPNRLAVQTFVTQWDNALLREAFQRELARGGQLYFLHNDVESIGR
MQRELSELVPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIV
INRADRFGLAQLHQLRGRVGRSHHRAYAYLLVPDRRSITPDAQKRLDAIASMDELGAGFT
LATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEARGAE
VELHVPALIPDDYLPDVHTRLTLYKRISSARDSDGLRELQVEMIDRFGLLPDPVKHLFAI
AELKLQANVLGIRKLELGEHGGRLVFEAKPNVDPLTIIQMIQKQPKLYAMDGPDKLKLKL
PLPEAADRFNAARGLLTALSPR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgccgccccttcccttccccgttccgccgctgcccaagtccggccagttccgcgcgcac
tggcgcgctcccgcgtcctccaccgccctggcctggcacatcgcctgcgccgcgtccgcg
caccgcgggccgttgctggtggtcgcccgcgacaaccagagcgcgcaccagctcgaagcc
gacctgcacagcctgctcggcgacgatccgagcctgccggtggtgccgttcccggattgg
gaaaccctgccctacgaccagttcagtccgcacccggacatcgtcagccagcgtctggcc
gcgctgcaccggctgccgacgctgacccagggcatcgtggtggtgccggtgcagacgctg
atgcagcgggtagcgccgctgcgctacatcgtcggcggcagtttcgacctgcgcgtgggc
cagcgcctggacctggatgcggagaagcggcgactggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccgggcgacttcgccgtgcgcggcggcctgctcgacgtgtatccg
atgggcaccgacgcaccgctgcggatcgaactgctggacgaggacatcgattcgatccgc
gccttcgacccggaatcgcagcgctcgctggaccatgtgcaggcggtgcgcatgctgccc
gggcgcgaagtgccgatggacgacgtcagcgtggagcgggtattgaccgcgctgcgcgaa
cgcttcgacgtcgacacccggcgcagcgcgctgtaccaggacctgaaggccgggctggcg
ccgtcgggcatcgagtactacctgccgctgttcttccaggaaacccgcagcagcggcgca
cgcgaggccaccgccaccctgttcgattatctgggcgagcacgtgctgccgctgatcgca
ccgggcgtgggcgccgccgccgacgcgttctgggcgcagacccaggcccgctacgagcaa
cgccgccacgacgtggagcgcccgctgctggcgccggaggagctgtaccaggcgccggac
gcgctgcgcgagcgcctcaacgggctgccgcgcatcgacgtgtgggccgccgaccacccg
cgcatcgacgaggcacaggcgctgggcgaccagccgctgccgccgctgccggtggcggcc
aaggacgccgcgcccggcgcggcgctgaagagcttcctcgatcactacccgggccgggtg
ttgatcgccgccgattcgcccggccgccgcgaggcgctgctggaagtgctggcggccgcg
gagttgaagccggaggtgctgccgaatttcgcggcatttgttccttctcccaccgggaga
aggtggcgcgaagcgccggatgagggtgcggcgtctgcgcggtcgggaacgaagaaggcg
ggtgcttcggcaagttccacggttgcgcagacgaactccactagcagtcggaccctcacc
ccaacccctctcccggggggagaggggctcgactccggcgcgatcgctgcacgctttgcc
attgcggttgcgccgctcgacgacggcttcgcgctggaggagccgcggatcgcggtgctg
accgagcgccagttgttccccgagcgcgccagccagccgcggcgcagccggcgcgtgggg
cgcgagccggaagcgatcatccgcgacctgggcgagctgtccgagggcgcgccgatcgtg
cacgaggaccacggcgtcggccgctaccgcgggctgatcgtgctcgatgccggcggcatg
cccggcgagtttctggaaatcgaatacgccaagggcgaccggctatacgtgccggtcgcg
cagttgcacctgatcagccgctactccggcgcctcggccgagaccgcgccgctgcattcg
ctgggcggcgaacaatggaccaaggccaagcgcaaggccgccgagaaggtacgcgacgtg
gccgcggagctgctggagatccaggcgcgccgccaggcccgtgccggactggcgctgcag
gtggaccgggcgatgtacgagccgttcgccgccggcttcccgttcgaggagacccccgac
cagttggccgcgatcgacgccaccctgcgcgacctggccagcagccagccgatggaccgc
gtggtctgcggcgacgtcggcttcggcaagaccgaggtcgcggtgcgcgcggccttcgcc
gcggccagcgccggcaagcaggtggcggtgctggtgccgaccacgctgctggccgaacag
cactaccgcaacttccgcgaccgcttcgccgactacccgctcaaggtcgaggtgctgtcg
cgcttcaagagcagcaaggagatcaaggccgagctggagaaggtcgccgccggcagcatc
gacgtgatcgtcggcacccatcgcctgctgcagccggacgtgaagttcaaggacctgggc
atggtcatcgtcgacgaggagcaacgcttcggcgtgcgccagaaggaagcgctgaaggcg
ctgcgcgccaacgtgcacctgctgaccctgaccgccacgccgatcccgcgtaccttgaac
atggccatggccggcctgcgcgacctgtcgatcatcgccacgccgccgccgaaccggctg
gcggtgcagaccttcgtcacccagtgggacaacgcgctgttgcgcgaagccttccagcgc
gaactggcgcgcggcggccagctgtacttcctgcacaacgacgtggagagcatcggccgc
atgcagcgcgagctgagcgaactggtgccggaggcgcgcatcggcatcgcccacgggcag
atgcccgagcgcgagctggaaaaggtgatgctggatttccagaagcagcgcttcaacgtg
ctgctgtcgaccacgatcatcgaatcgggcatcgacatccccaacgccaacaccatcgtc
atcaaccgcgccgaccgcttcggcctggcgcagttgcaccagttgcgcggccgagtcggc
cgttcgcaccatcgcgcctacgcctacctgctggtaccggaccggcgcagcatcaccccc
gatgcgcagaagcggctggacgcgatcgcctcgatggacgaactgggcgccggcttcacc
ctggccacccacgatctggagatccgcggcgccggcgaactgctcggcgaggaccagagc
gggcagatggccgaggtcggtttcagcctgtacaccgaactgctggaacgcgcggtgcgc
agcatccgccagggcaagctgccggacctggatgccggcgaggaagcgcgcggcgccgag
gtggaactgcatgtgcccgcgctgatccccgacgactacctgcccgacgtgcatacccgc
ctgaccctgtacaagcgcatttccagcgcccgcgacagcgacggcctgcgcgaactgcag
gtggagatgatcgaccgcttcggcctgctgccggatccggtgaagcacctgttcgcgatc
gccgaactgaagctgcaggccaacgtgctgggcatccgcaagctggaactgggcgagcac
ggtgggcgcctggtattcgaggccaagcccaacgtggatccgctgaccatcatccagatg
atccagaagcagcccaagctgtatgcgatggatggcccggacaagctgaagctcaagctg
ccgctgccggaggcggccgaccgtttcaatgccgcgcgcgggctgctgaccgcgctgtcg
ccacgctga
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