Xanthomonas sacchari: SB85_19460
Help
Entry
SB85_19460 CDS
T03566
Name
(GenBank) RNA polymerase sigma54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
xsa
Xanthomonas sacchari
Pathway
xsa02020
Two-component system
xsa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xsa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SB85_19460
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SB85_19460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xsa03021
]
SB85_19460
Transcription machinery [BR:
xsa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SB85_19460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
HTH_23
Sigma70_r4
HTH_Crp_2
HTH_11
Sigma70_r4_2
HTH_AsnC-type
Motif
Other DBs
NCBI-ProteinID:
AJC47958
LinkDB
All DBs
Position
unnamed:274972..276435
Genome browser
AA seq
487 aa
AA seq
DB search
MKARLQTSLGQHLVMTPQLRQAIKLLQMSSAELEVEIAEAVESNPLLEWSEDAAPAFERN
ESADHGLDRDHAAGETRSDGDGDRGESAQASDGADWADAEPAWAGGSGGSFDDDDLGSAA
ERVAEPDTLIDHLLWQLHLSPLSARDRSIGAALIDALDDDGYLREPLAAIAETLRPDIAA
EEDEILTVLHQIQRFDPAGIAARSLGECLTLQLDTLPEDTPGLALARTIANGPLERLPRS
GVAGLAHELKRPAAEVDTAVALLRSLDPRPGKQIGELGSDTYVVPDCVVWRQRGVWHAAL
SAHAQPKVTIHRGYERLIRQCGESDAGYLRGQLQEARWLLKSLEARGETLLKVTRCLLKQ
QAGFLEFGEQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPLRAFFASGIDTD
SGGEASSTAIQAMIRRLIEAENPRKPLSDAKLADLLKSAGVPVARRTVAKYREAMNISAS
HERVRIG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcacggctgcaaacatcgctgggacagcacctggtcatgacgccgcagttgcgg
caggcgatcaagctgttgcagatgtccagcgccgagctggaggtggagatcgccgaggcg
gtggagagcaatccgctgctggagtggtccgaagacgctgcaccggcgttcgaacgcaac
gaaagcgccgaccacggccttgaccgcgaccacgcggcaggcgagacacgtagcgacggc
gatggcgaccgcggcgaatccgcgcaggccagcgatggtgccgactgggccgacgccgag
ccggcctgggccggcggcagcggcggttcgttcgacgacgacgacctgggcagcgcggcc
gaacgcgtggccgagccggacaccctgatcgaccacctgctgtggcagttgcacctgtcg
ccgctgtccgcgcgcgaccgcagcatcggcgcggcgctgatcgacgccttggacgacgac
ggctatctgcgcgagccgctggccgcgatcgccgagacgctgcgcccggacatcgccgcc
gaggaggacgagatcctcaccgtgctgcaccagatccagcgcttcgacccggccggcatc
gccgcgcgcagcctgggcgaatgcctgaccctgcaattggacaccctgcccgaggacacg
ccgggcctggcgctggcccgcaccatcgccaacggtccgctggagcggctgccgcgcagc
ggcgtggccgggctggcccacgaactcaagcgtccggcggcggaggtcgacaccgcggtc
gcgctgctgcgctcgctggacccgcgcccgggcaagcagatcggcgaactgggcagtgac
acctacgtggtaccggactgcgtggtctggcgccagcgcggggtctggcatgcggcgctg
tcggcgcacgcccagcccaaggtcaccatccaccgcggctacgagcggctgatccgccag
tgcggcgaaagcgacgccggctatctgcgcgggcaactgcaggaagcgcgctggctgctg
aagagcctggaggcgcgcggcgagaccctgctcaaggtgacgcgctgcctgctcaagcag
caggccggcttcctggagttcggcgaacaggcgctgcggccgctgaccctgcgcgagatc
gccggcgaactgggcctgcacgagagcaccatctcgcgcgccatcgcccgcaagtacgtg
cgcaccccgcgcggcaccatcccgctgcgcgccttcttcgcctcgggcatcgacaccgac
agcggcggcgaggcgtccagcacggcgatccaggcgatgatccggcggctgatcgaggcg
gaaaatccgcgcaagccgctttctgacgccaagctggccgacctgctgaaaagtgccggc
gtgcctgtagcgcgccgcaccgtagcgaagtatcgtgaggccatgaacatttccgcctcc
cacgaacgcgttcgaatcggctag
DBGET
integrated database retrieval system
