Xenorhabdus stockiae: AB0856_000364
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Entry
AB0856_000364 CDS
T11396
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xsk Xenorhabdus stockiae
Pathway
xsk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xsk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AB0856_000364 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xsk03021
]
AB0856_000364 (rpoC)
03400 DNA repair and recombination proteins [BR:
xsk03400
]
AB0856_000364 (rpoC)
Enzymes [BR:
xsk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AB0856_000364 (rpoC)
Transcription machinery [BR:
xsk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AB0856_000364 (rpoC)
DNA repair and recombination proteins [BR:
xsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AB0856_000364 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
YAP79218
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All DBs
Position
411864..416087
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERSQILTEEQYLDALEEFGDEFDAKM
GAEAIQSLLKNIDLENECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEVRDGEGNVTVNTGLVDTTIGRAILWMIVPRGLPYSLINQPLGKKA
ISKMLNTCYRVLGLKPTVILADQTMYTGFAYAARSGVSVGIDDMVIPEKKEGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSSETVINSKGEEEQQVSFN
NIFMMADSGARGSAAQIRQLAGMRGLMATPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGSADILVPRNTLLNEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGQLKL
TNAKFVTNSAGKLVITSRNTELRLIDDFGRTKESYKVPYGSVLSKGDGEKVAGGETVANW
DPHTMPVVSEVSGIIQFSDMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGITISAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVISDGPESPHDILRLRGVHAVARYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKVTIASAGSSEFLEGEQVEYARVKVANRKLDQDGKVPATFHRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRHENEVVE
APQVTVDEATANLAELLNAGFGSSSNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaaccaagaccgaagagtttgatgcgatc
aaaattgctctggcctctccagatatgatccgttcgtggtcattcggggaagtaaaaaag
ccggaaaccattaactaccgtacgttcaaacctgagcgtgacggtcttttctgtgcgcgt
attttcgggccggtaaaagattacgaatgcttgtgtggtaaatacaagcgcttaaaacac
cgtggtgtgatttgtgagaagtgtggtgttgaagtcactcagactaaagttcgccgtgaa
cgtatgggtcacattgaactggcatctccgactgctcacatctggttcctgaaatcactg
ccatcccgtatcggcttgctgctggatatgccactgcgcgacatcgaacgcgtactgtac
ttcgaatcctatgtggttgtagaaggcggcatgaccagtcttgagcgcagtcagatcctg
actgaagagcagtatctggatgcactggaagagttcggtgatgagttcgacgcaaaaatg
ggtgcagaagcgatccagtctttgttgaaaaacatcgatctggaaaacgaatgtgaaact
ctgcgtgaagagctgaacgaaaccaactctgaaaccaagcgtaagaaactgaccaagcgc
atcaagctgctggaagctttcattcagtctggtaacaaaccagagtggatggttctgact
gttctgccagttctgccaccggatctgcgtccattggttcctctggatggtggccgtttc
gcaacgtctgacctgaacgatctgtatcgtcgcgttatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccagacatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggttgatgcattgctggacaatggtcgtcgtggtcgcgcaatcacgggttctaac
aagcgtcctctgaaatccctggctgatatgatcaagggtaaacagggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactcaggccgttctgtaattaccgtaggtccatac
ctgcgcctgcatcagtgtggtcttcctaagaagatggcactggagctgttcaaaccattc
atctacggcaaactggaactgcgtggtctggcgactaccatcaaagcagccaagaaaatg
gttgaacgcgaagaagcggttgtatgggatatccttgatgaggttatccgtgagcacccg
gttctgctgaaccgtgcaccaacccttcaccgtctgggtattcaggcgtttgaaccggtt
ctgatcgaaggtaaagcgattcagttgcacccattggtgtgtgcggcttataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgttgacactggaagcccagttggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgagcggtgaaccaatcatc
gttccatctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcg
aaaggcgaaggcatggttctgaccggtcctaaagaagcagaacgcgtataccgcgcaggt
ctggcttctctgcatgcccgtgtcaaagttcgtatcactgaagaagtgagagatggcgaa
ggcaacgttacggttaatacaggtctggttgataccactatcggtcgtgccatcctgtgg
atgattgtaccgcgtggtctgccatactcactgattaaccagccactgggtaaaaaagcg
atctctaagatgctgaacacctgttaccgtgtgctgggtctgaaaccaaccgttatctta
gctgaccagaccatgtacaccggttttgcttacgctgcccgttcaggggtatccgtaggt
attgacgacatggttattcctgagaagaaagaaggcatcatcgcggaagcagaagctgaa
gttgctgaaattcaggaacagttccagtcaggtctggtaactgcgggcgaacgctataac
aaagttatcgatatctgggcggcggcgaacgaacgtgttgctaaagcgatgatggaaaac
ctctcttctgagactgtgattaacagcaaaggcgaagaagaacaacaggtttccttcaac
aacatctttatgatggccgactccggtgctcgtggttctgctgctcagattcgtcagttg
gcgggtatgcgtggtctgatggcaacgccagatggctccatcatcgaaaccccaatcacc
gcgaacttccgtgaaggtctgaacgtacttcagtacttcatctcaacccacggtgctcgt
aaaggtcttgcggataccgcactgaaaactgcgaactccggttatctgactcgtcgtctg
gttgacgttgctcaggatctggttgttactgaagatgactgtggtacgcataatggcatc
atgatgactccggttatcgaaggtggtgacgttaaagaacctctgcgtgagcgtgtactg
ggtcgtgtgactgctgaagacgttctgaaaccgggttctgcggacattctggttccacgt
aacactctgctgaacgaaaaatggtgtgatctgttagaagaaaactccgttgacagcgtg
aaagtacgctctgtagtaagttgtgaaactgacttcggtgtctgtgcgaactgttacgga
cgtgaccttgctcgcggtcatatcatcaacaaaggtgaagcagttggtgttatcgcggca
cagtcaatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatccagcattcaggtacgtaacaaaggtcaattgaaactg
accaacgcgaaattcgttactaactcagcgggcaaactggttattacttcccgtaatacc
gaattgcgcctgattgacgatttcggccgtactaaagaaagctataaagtgccttacggc
tccgtattgtcaaaaggtgatggcgagaaagttgccggcggtgaaaccgttgctaactgg
gatccacacaccatgccagtcgtgagtgaagtgtccggtatcatccagttctccgacatg
gtagatggccagaccattacccgtcagacggacgaactgaccggcctttcatcactggtg
gttctggacagtgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgctcagggtaacgacgttctgatcccgggtacagatatgcctgctcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcataactatctctgcgggtgacacg
ctggctcgtattcctcaggaatctggcggtactaaagatatcaccggtggtctgccacgc
gttgcagacctgttcgaagcacgtcgtccgaaagagcctgctatcctggcagaaatcagc
ggtatcgtttccttcggtaaagaaaccaaaggtaaacgtcgtctggtaatcagcccactg
gatggtagtgatgcttacgaagagatgatccctaaatggcgtcagctcaacgtattcgaa
ggtgaggttgttgaacgtggtgacgtgatctccgatggtccagaatctccacacgacatt
ctgcgtctgcgtggcgttcatgccgttgctcgttacatcactaacgaagttcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaagtgaccattgcaagcgcgggaagctctgaattccttgaaggcgagcaggtt
gaatacgcacgcgttaaagttgctaaccgtaaactggatcaagatggcaaagtccctgcg
accttccaccgtgatctgctgggtattaccaaagcatcactggcaacagaatccttcatc
tctgcggcgtcgttccaggaaacaactcgcgtactgactgaagcagctgttgcaggtaaa
cgtgatgaattgcgtggcctgaaagagaacgtcattgtgggtcgtctgatccctgcgggt
acaggttatgcttaccatcaggatcgtatgcgccgtcgtcacgaaaacgaagtggttgaa
gcaccacaggtgactgtcgacgaagccactgcaaaccttgctgaattgttgaatgcaggt
ttcggtagcagctctaacgagtaa
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