Xenorhabdus stockiae: AB0856_002800
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Entry
AB0856_002800 CDS
T11396
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xsk Xenorhabdus stockiae
Pathway
xsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB0856_002800 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xsk03019
]
AB0856_002800 (rhlE)
Enzymes [BR:
xsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB0856_002800 (rhlE)
Messenger RNA biogenesis [BR:
xsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB0856_002800 (rhlE)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
YAP81559
LinkDB
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Position
complement(3252008..3253342)
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AA seq
444 aa
AA seq
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MNFESLGLKADILRAIEEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPIL
QLLSESPIQSKGRRPVRALILTPTRELAAQVGENVRNYSKYLRLRSFVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSHVEMLILDEADRMLDMGFIHDIRRVLNKLPAK
RQNLLFSATFSDEIKNLANKLLRDPVSVEVARRNSASEQIEQAVHFVDKKRKGELLSYMI
GSQNWQQVLVFTRTKHGANRLAEQLNKDGVTAAAIHGNKSQGARTRALADFKSGQIRALV
ATDIAARGLDIDQLPHVVNYELPNVAEDYVHRIGRTGRAEATGQAISLVCVDEHKLLKDI
ERLLKREIPRITTPGYEPDPSIKAEPIQNGRNGRSNQPRAQRTGDKQGANRQNHGHSRNK
NVWPKSASSQKPRNRRPAKAVAGE
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgagtcactcggcttgaaggctgatattttgcgtgccattgaagaacaagga
tacgcagagcctacccctattcagcaacaggcgattcctgttgtgttgtccggtaaagat
ctactggcgagtgcccagaccggaacggggaaaacggcaggttttactttgcctatctta
cagttattgagtgaatctcccattcaatctaaagggcgtcgcccggtcagggctttgatc
ctgacgccaacccgtgaactggcggcacaagtgggggaaaatgtccgcaattacagcaaa
tatctccggctacgttcctttgtggtatttggaggggtaagtatcaacccgcaaatgatg
aaattgcgtggtggagtcgatattttagtcgcaacaccagggcgtttgctggatctggaa
caccaaaatgccgtagacctatcccacgtggaaatgctgattctggatgaagcggatcgt
atgttggatatgggttttattcatgacattcgtcgggtactgaataaactgccagccaaa
cgtcagaatctgctgttttcagcaacattctcggatgagatcaaaaatctggctaacaaa
ttgctgcgtgatccggtcagtgtagaagttgcccgtcgtaattcagcttctgagcaaatt
gagcaggctgttcattttgtagataagaaacgcaaaggggaattgctttcttatatgatt
ggcagccagaactggcagcaggtactggtatttacccgtacgaaacatggcgcaaaccgt
ttggcagaacagctcaataaagatggtgttactgcggcagcgattcatggcaataagagc
caaggtgccagaacccgtgcattggctgattttaaaagtggtcagatacgggcattagtt
gcaacggatatcgcggcccgtgggctggatattgaccagctacctcatgttgttaactat
gaattgccgaatgttgcagaagattatgtgcatcgtatcggtcgtaccggtcgtgccgaa
gcaacagggcaggcaatatctctggtatgtgttgatgaacataaattattgaaagatatt
gagcgcttgctgaagcgggaaattccgcgtatcaccactcccggctatgaacctgatcct
tcgattaaagcagagcctattcagaatggtcgtaacgggcgcagtaaccagccccgagct
cagcgtaccggtgataaacagggcgctaaccggcaaaatcatggccattcacgcaacaag
aatgtatggccaaagagtgcctcatcacagaaacctcgcaatcgcagaccagctaaagcg
gtagcaggagagtaa
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