Xenorhabdus stockiae: AB0856_002825
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Entry
AB0856_002825 CDS
T11396
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
xsk Xenorhabdus stockiae
Pathway
xsk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB0856_002825 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xsk03400
]
AB0856_002825 (uvrB)
DNA repair and recombination proteins [BR:
xsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB0856_002825 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AB0856_002825 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
Kinesin
PMT2_N
DUF87
Motif
Other DBs
NCBI-ProteinID:
YAP81580
LinkDB
All DBs
Position
complement(3275490..3277523)
Genome browser
AA seq
677 aa
AA seq
DB search
MSKETNKVFRLHSDFEPGGDQPEAIRKLQDGLEDGLAHQTLLGVTGSGKTFTIANVIANM
NRPTMVLAPNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVN
EHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDSYLKMMLHLTNGMLIDQRSILRRL
AELQYTRNDQAFQRGTFRVRGEVIDIFPAESDEHALRVELFDDEVERLSLFDPLTGQVEY
NVPRYTVYPKTHYVTPRERILQAIEEIKVELADRRKVLLASDKLLEEQRITQRTQFDLEM
MNELGYCSGIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTVPQLGAMYRGDRS
RKETLVEYGFRLPSALDNRPMRFEEFEALAPQTIYISATPGNYELEKSGNEVVEQVVRPT
GLIDPEVEVRPVATQVDDLLSEIRIRAAKNERVLVTTLTKRMAEDLTEYLEEHGERVRYL
HSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI
QTIGRAARNLHGKAILYGDKITASMEKAINETERRRAKQQAFNEENGIVPKGLNKKVGDI
LQLGQPSNGKGKNRTRNRSKSDLGVDDFHKLSAKELENKIRELEEKMYQYARDLEFEQAA
NMRDQVQALRAQFIANS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagaaacgaacaaagtattcaggttgcattctgatttcgaacctggcggtgat
cagccagaagccatccgtaaactacaggatgggctggaagatggccttgcccatcagaca
ttattgggagtcacgggttcaggtaaaacgtttacgattgccaatgtcatcgccaacatg
aaccgaccaacaatggttctggctcccaataaaacactggcagctcagctctatagtgaa
atgaaagagttttttccggaaaacgccgtagagtacttcgtttcttattatgattattat
cagcctgaagcctatgtccccagctctgatacttttattgaaaaagatgcctctgtaaac
gaacacattgaacagatgcgactatctgcgaccaaagcgctgctggagcgaagagatgtg
gttgttgtggcttctgtttccgctatttatggactgggtgaccctgatagctacctgaaa
atgatgcttcatctgacaaatggtatgttgattgatcagcgctctatcttgcggcgtttg
gctgaactgcaatatacgcgtaatgatcaggcattccagcggggaacattccgtgtgcgt
ggcgaagtcattgatatttttccggccgaatcggatgaacatgcgttacgtgttgaactg
tttgacgatgaagttgaacggctttctctgtttgatccactgacgggtcaggttgagtat
aacgttccccgttatacggtttatcctaaaacgcactatgtaacacctcgtgagcgtatc
cttcaggcgatagaagagattaaagttgaattagctgacaggcgcaaagtccttctggct
tcagataagttactggaggagcagcgcatcactcagagaacacaatttgatctcgaaatg
atgaatgaactgggatattgctccggtattgaaaactattcccgttatctgtctggtcgt
gcaccgggtgaaccccctccgactttatttgactatcttcctgcggatggcttgctggtg
gtggatgaatcccatgtcaccgttccacagcttggtgctatgtatcggggagaccgttcc
cgcaaagagacactggtagaatacggcttccgtctgccatcagcactggataaccgcccg
atgcgttttgaagagttcgaggcgctggcgccacaaaccatctatatatcagcaaccccc
ggcaattatgaactggaaaaatccggtaatgaagtggtcgaacaggtggtacgcccaacg
ggtctgattgatcctgaagttgaagtccgcccggtagcaactcaggtggatgatttgctg
tctgaaatccgtatccgggcggctaaaaatgaacgtgtactagtcaccactctgactaag
cgtatggctgaggatttaactgaatatctggaagaacacggagagcgggtgcgctacctc
cactctgatattgataccgttgagcgggttgaaattattcgtgatttgcgcttgggtgaa
tttgatgtactggtggggatcaacttgttgcgtgaaggtctcgatatgccagaagtctct
ttggtggccattttggatgcagataaagagggcttcctgcgttcagagcgctcactgatt
cagacgattgggcgtgcagcgcgtaacttgcatggtaaagctattttgtatggcgacaaa
attaccgcttctatggaaaaagccatcaatgaaacagaacggcgtcgagcgaaacaacag
gcatttaacgaagaaaacggtatcgtaccaaaagggttgaataaaaaagttggcgatatc
ctacaacttggtcagcctagtaatggcaaaggaaaaaacagaaccagaaatagaagcaaa
tctgatttgggggttgatgatttccataaattatctgcgaaggaactggaaaacaaaatc
cgtgaattggaagaaaaaatgtatcaatatgcgcgggatcttgaatttgagcaggcagct
aacatgcgcgatcaggttcaggcattgagagcacagtttatcgctaattcctaa
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