Xenorhabdus stockiae: AB0856_003553
Help
Entry
AB0856_003553 CDS
T11396
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
xsk Xenorhabdus stockiae
Pathway
xsk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AB0856_003553 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xsk03400
]
AB0856_003553 (recD)
Enzymes [BR:
xsk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AB0856_003553 (recD)
DNA repair and recombination proteins [BR:
xsk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AB0856_003553 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Viral_helicase1
UvrD_C_2
NAT10_TcmA_helicase
AAA_11
SH3_13
UvrD-helicase
AAA_22
SLFN-g3_helicase
PhoH
CbiA
AAA_16
nSTAND3
DEAD
UvrD_C
SRP54
AAA_28
T2SSE
DO-GTPase1
NPHP3_N
AAA
FtsK_SpoIIIE
NTPase_1
AAA_14
Motif
Other DBs
NCBI-ProteinID:
YAP82262
LinkDB
All DBs
Position
complement(4145293..4147224)
Genome browser
AA seq
643 aa
AA seq
DB search
MMSLLQQAVAQKLLRPLDVQFAYAMVEDENPLLLLITAYLSAEAGAGHVCLPLERVTPEH
LFEGRNPELVASLWSLAGEPSRQQIISALQACPAIGDGQSPTPIILSRRGLSDYRLYLQR
MWQSECQVAAFFADVALADDIDEKQLRSILDELFGVIDKDLAGEEATDWQKVAAAVAVTS
RISVISGGPGTGKTTTVAKLLAALIKLNEGRQLSIQLAAPTGKAAARLTESLSEAVSKLA
LTDEQRRSIPDQAQTIHRLLGAQPESQKLRYHRGNPLSLDILIIDEASMVDLPMMARLIE
ALPAKAKVIFLGDKDQLASVEAGAVLGDICRFAEQGYSAARAAQLSRLTGCQLVPYSESE
PENAALAVRDSLCLLRKSFRFNSASGIGQLASAVNQGNSRRVSSVLKQPLSDVYFNTLAD
DEDYQRLLTETAEGYQRYLTLVKERASEKEILAEFNRFRLLSALRDGPFGVRGLNQRVEQ
LLHSKGMVVLPRYTGNRHSYIKKEYAEKENRGYAGRPIMILRNDSTLGLFNGDIGIMLKD
QNDELKAYFQLSDGQIKPFQPSRLPLHETAYVMTVHKSQGSEFEHTALVLPTQFSPVVSR
ELVYTALTRAREKLTIYAHKAVLVKAVATPTQRRSGLAEWFKT
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcattattgcagcaggcagtggcccagaaactactgcgcccattggatgtgcag
tttgcctatgcgatggttgaagatgaaaacccattgctattattaattaccgcctatttg
agtgcggaagcgggggccggtcatgtttgtctgcccttagagcgcgttactcctgaacat
ttatttgaagggcgcaaccctgaactggtggcatcactctggtctttggcaggcgaacct
tcccggcaacagattatttctgcattgcaggcctgccctgccattggagacgggcaatct
cctactccaattatactttcccgccgtgggctctctgattatcgcctttacctacagcgc
atgtggcagagtgagtgtcaggtagcggcattttttgctgatgtggcattggcggacgat
attgatgaaaaacagttacgcagcatcttagatgagttatttggcgttattgataaagat
ctggctggcgaagaggctactgactggcagaaagtggccgctgcggttgcggtgaccagc
cgtatctccgttatctctggcggccccggaacagggaaaacaacgacggtagcaaaacta
ctggctgcgctgattaaattgaatgaggggcgacaattaagtattcagctagctgctccg
acggggaaagcggcggccagactgacggaatcgcttagtgaagcggtgagtaagcttgct
ttgacggatgaacagcgacggagtattcctgatcaggcgcaaaccattcatcgtctattg
ggagcacagccggaaagccagaaacttcgttaccaccggggtaatccgctttctctggat
attctgataatagatgaagcttctatggtggatttaccgatgatggcccgtctgattgaa
gccttgccggcaaaagcaaaagtcatttttctgggtgataaggatcagttagcgtccgtg
gaggcgggagcggtcttaggggatatctgtcgctttgctgaacagggttacagtgcggca
cgtgcagcacagttgtctcggttaaccggctgccagttagtgccatattcagagtctgaa
ccggaaaatgcagcgctggcagtgcgtgatagcttatgcctgctgcgtaaaagtttccgt
tttaattccgcatccggtatcgggcaactggcctcagcggtcaatcagggaaatagcagg
cgtgtttcctcggtactgaaacaacctttgtctgatgtgtactttaacactctggctgat
gatgaagattatcagcgattactgactgaaactgctgaaggttatcaacgatatttgact
ctggtgaaagaaagagcgtctgaaaaggagattctggccgagtttaaccgtttcagatta
ctcagtgcattaagggacgggccatttggtgtcagagggttgaatcagagagtagagcag
ttattgcatagtaaagggatggttgttttaccgagatatacaggtaatcggcacagctac
atcaaaaaagaatacgcagaaaaagaaaaccggggctatgccggtcggccgattatgatc
ctacggaatgacagcacattggggctgtttaacggggatattggcattatgctgaaggat
cagaatgatgagctgaaagcctattttcagttatctgacgggcagataaagcctttccaa
ccgagtcgattgcctctgcatgagacagcatatgtaatgacagtacataaatcacagggc
tctgagtttgagcacacggcattagtgctgccgactcagttttctcctgttgtcagccgg
gagctggtctatacagcgttaacccgtgcccgtgaaaaactgactatttatgcgcataaa
gcagttctggttaaagcggtagcgacacccactcaaaggcggagtgggctggccgaatgg
tttaaaacctaa
DBGET
integrated database retrieval system
