Xenorhabdus stockiae: AB0856_003642
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Entry
AB0856_003642 CDS
T11396
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xsk Xenorhabdus stockiae
Pathway
xsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB0856_003642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xsk03019
]
AB0856_003642
03009 Ribosome biogenesis [BR:
xsk03009
]
AB0856_003642
Enzymes [BR:
xsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB0856_003642
Messenger RNA biogenesis [BR:
xsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB0856_003642
Ribosome biogenesis [BR:
xsk03009
]
Prokaryotic type
rRNA helicases
AB0856_003642
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
YAP82348
LinkDB
All DBs
Position
complement(4256558..4258513)
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AA seq
651 aa
AA seq
DB search
MTTETEISFADLGLSAPILSALQDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNIDAELRAPQILVLAPTRELAVQVAEACSDFSKHMRSVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTNRPDISQSYWSVYGGVRKNEALVR
FLEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKNGRLDI
LIATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLR
NIERTMKLTIPEVELPNAELLSQRRLEKFAGNVQQQLESSDLDQYRALLSKLGTGEELDM
ETLAAALLKMAQGERPLILPPDPVRRPRREFNDRDDRRRNGNSFGERDRGDRGDRGERGD
RGDRPRRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTI
ELPKGMPGDLLSHFTRTRILNKPLNMQLLGDAQPFERRERRGGGRNGGNGGNGGNGARRD
RDGFGNGNGGGRRFNNNERRGGGERGSFRGRGNDDFNGGQRRRQQPSNGNV
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgagactgaaatctcttttgctgatttagggttatcagcacctattctttct
gcgttgcaagacatgggctatgagaagccttctccaattcaacagcaatgcattcctcac
ctattaaatggtcgtgacgtgctgggtatggcacagactggtagtggtaaaactgcggca
tttagcttacctctactgcataatattgatgctgagcttagagctccacagatccttgtg
ttagcaccgacccgtgaactggcggtacaggttgctgaagcatgttcagatttttctaaa
cacatgcgcagtgtgaatgttgtcgcactttatggtggacagcgttatgacgttcagctg
cgtgctttgcgtcagggaccacaagttgttgtaggtacaccgggtcgtctgctggatcac
ctgaagcgtggtacgctggatctgtccaacctgaaaggtctggtactggacgaagctgac
gaaatgctgcgtatgggttttatcgaagatgttgaaaacatcatgagccagatcccggca
gaacatcagactgctctgttctcagcaactatgcctgaagcgattcgtcgtattactcgt
cgtttcatgaaggagccacaggaagttcgtatccagtccagcgtaaccaaccgtccggat
atcagccagagctactggtctgtttacggtggtgtacgtaaaaacgaagcactggtacgt
ttccttgaagcagaagattttgatgcagcgattattttcgtacgtaccaagaatgcaact
ctggaagtggcagaaactcttgagcgtaacggctataactctgcggcactgaacggtgat
atgaatcaggctctgcgtgagcagactctggagcgtctgaagaacggtcgtctggatatt
ctgatcgcgactgacgttgctgctcgtggtctggacgttgaccgtattagcctggttgtt
aactacgacatcccaatggatgcggagtcttatgtacaccgtatcggtcgtacaggccgt
gcaggccgtgcaggtcgcgcgctgttgtttgttgaaaaccgcgaacgtcgtctgctgcgt
aacattgaacgtacaatgaagctgacaattccagaagtagaactgccgaatgcagaactg
ctgagccaacgccgtctggagaagtttgcaggtaacgttcagcagcagctggaaagcagc
gatctggatcaataccgcgctctgctgtctaagctgggtaccggtgaagagctggatatg
gaaacactggcagcagcactgctgaaaatggcacagggtgaacgcccactgatcctgcca
ccagatcctgtccgtcgtcctcgtcgtgaattcaatgatcgtgatgaccgtcgccgtaat
ggtaatagcttcggtgagcgcgaccgtggcgacagaggtgaccgtggtgaaagaggcgac
cgtggtgatcgtcctcgtcgtgagcgtcgcgacgttggcgatatggaactgtaccgtatt
gaagtgggccgtgatgatggtgttgaagttcgccacattgttggtgctattgctaacgaa
ggtgatatcagcagccgttacatcggtaacatcaaactgtttgcaactcactctaccatt
gagctgccaaaaggaatgccgggagacctgctgtcacacttcactcgtacccgtatcctg
aacaagccactgaatatgcagctgttaggtgatgcacagccatttgaacgtcgtgagcgt
cgtggtggtggtcgtaacggcggtaatggtggtaacggcggtaacggtgctcgccgtgat
cgtgacggttttggcaacggcaacggtggtggtcgtcgctttaataacaatgaacgtcgt
ggtggcggtgagcgcggttctttccgtggccgtggcaatgatgatttcaacggtggtcag
cgtcgccgccagcaaccaagcaatggtaacgtgtaa
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