Xanthomonas sontii: RAB70_04160
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Entry
RAB70_04160 CDS
T10538
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xso Xanthomonas sontii
Pathway
xso03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RAB70_04160 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xso03400
]
RAB70_04160 (ligD)
Enzymes [BR:
xso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RAB70_04160 (ligD)
DNA repair and recombination proteins [BR:
xso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RAB70_04160 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
XCI85486
LinkDB
All DBs
Position
complement(975114..977756)
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AA seq
880 aa
AA seq
DB search
MSLADYRRKRRFDKTREPEPGKPVPAGQRPIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPLDYATFEGEIPQGEYGGGHVAQFDHGVWSSADDPEAQLAK
GHLRFELFGDKLKGGWHLVRSGKPARQPQWLLFKEDDAFAGDLEADDLLADVTAAPAQDV
KRAGAGKPDKRKVTVVAPVRKGRRTNWAKLAEALPGAVSAAAPDGPFAPQLARLGDAPPQ
GAQWIHEIKWDGYRILSTVADGVVRLWSRNAIEWTDKIPEIRDAIAALGLRSAALDGELI
AGKGTKEDFNLLQAVLSGERQGKLALALFDLLHLDGIDIAAAPLSARKALLQRLLQDVDT
HLAFSSHIDGEGDAAFQLAGAQHFEGIVSKRADRGYHGGRSDDWRKTKQLRSDEFAVVGY
TAPKGSRSGFGALLLARPDPEHGWLYVGRVGSGFSDALLRELTALIGKAGSATPSVHVPT
TETDLRSARWFAPRFVVEVFYRGIGGQQLLRQASLKAVRPDKDIADLGDADAPAPRAAAA
RATPAARKAKADATAKTTKATKVAKAAKSSETNISGPRRSKRDVATTGTARTPPTLSSPG
RVVFPDIGATKREVWDYYSAVMDHLLPEIAGRPLSIIRCPAGAERACFFQKHHTAGLELV
SSVRLKEESGTQAEYLVVEDAAGLLELVQFNALEFHPWGAHAASPERADRVVFDLDPGPD
VPFAEVKRAATDIRKLLAQLELESFLRVSGGKGLHVVVPLAPGCDWDLTKRFAHGFADAL
AQSQPERFLATASKRLRNQRIFVDYLRNGRGATAVASYSLRARAGAPVAMPLAWSDLSKL
HRADAFKLRDVPAKLKRRRKDPWAGIDALKQNLSRWAETE
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgccgactaccgccgcaagcgccgcttcgacaagacccgcgagccggagcct
ggcaagccggtgccggcggggcagcggccgatcttcgtcgtgcagctacaccacgccagc
cgccgccattacgatttccgcctgcaggtcggcgatgcgctgaagagctgggcggtgccg
aaggggccgagctacgaccccaaggtcaagcgcatggcggtggaagtggaagaccatcca
ctggactacgccacgttcgagggcgagatcccgcagggcgaatacggcggcggccacgtc
gcccagttcgatcacggcgtgtggagcagcgcggacgatccggaagcgcaactggccaag
ggtcatctgcgcttcgaactgttcggcgacaagctcaagggcggctggcacctggtgcgc
tcgggcaagccggcgcggcagccgcagtggctgctgttcaaggaggacgacgccttcgcc
ggcgacctggaggcggacgacctgctggccgatgtcaccgcggcgccggcgcaggacgtc
aagcgcgccggcgccggcaaaccggacaagcgcaaggtcacggtggtggcgccagtgcgc
aaaggccgccggacgaactgggccaagttggccgaggcgctgcccggcgcggtgtcggcg
gcggcgccagacgggccgttcgcgccgcagctggcccggcttggcgacgcgccgccacag
ggcgcgcagtggatccacgagatcaagtgggacggctaccggatcctgtccaccgtcgcc
gacggcgtggtgcggctgtggtcgcgcaacgcgatcgaatggaccgacaagattcccgag
atccgcgatgccatcgccgcgctgggcctgcgctcggcggcgctggatggcgaactgatc
gccggcaagggcaccaaggaggacttcaacctgctgcaggcagtgctgtccggcgagcgt
cagggcaagctcgcgctggccctattcgacctgctgcatctggacggcatcgacatcgcc
gctgcaccgctgtccgcgcgcaaggcgttgttgcagcggctgctgcaggacgtcgatacg
cacctggccttcagctcgcacatcgacggcgaaggcgacgcggcgttccagctcgctggc
gcgcagcacttcgaaggcatcgtctccaagcgcgccgaccgcggctaccacggcggccgc
agcgacgactggcgcaagaccaagcagctgcgctcggacgaattcgcggtggtcggctac
accgcacccaagggcagccgcagcggcttcggcgcgttgctgctggcgcggccggatccc
gagcatggctggctgtacgtcgggcgggtcggctccggtttctccgatgccctgctgcgc
gagctgaccgcgctgatcggcaaggccggcagcgccacgcccagcgtgcacgtgcccacc
accgagaccgacctgcgcagcgcgcgctggttcgcgccgcgcttcgtggtggaggtgttc
taccgcggcatcggcgggcagcagttgctgcgccaggcctcgctgaaggcggtgcgcccg
gacaaggacatcgccgacttgggcgatgccgacgcaccggcaccgcgcgcggcggcggcg
cgggcgacgccggcggccaggaaagccaaggcagacgcaacggccaaaacaacgaaggca
accaaggtggcgaaggcggcgaagtcgagcgaaaccaatatcagcggccctcggcgcagc
aagcgcgacgtcgcgaccacgggcaccgcgcgcacgccgccgaccctgtccagcccgggc
cgcgtggtcttccccgacatcggcgcgaccaagcgcgaggtctgggactactacagcgcg
gtgatggatcacctgctgccggagatcgccggtcgcccgctgtcgatcatccgctgcccc
gccggtgccgaacgcgcgtgcttcttccagaagcaccacaccgccgggctggaactggtg
tcgtcggtgcggttgaaggaagaaagcggcacccaggccgagtacctggtggtcgaggat
gcggctgggctgctggaactggtgcagttcaatgcgttggagttccacccgtggggcgcg
catgccgcgtccccggagcgtgccgaccgcgtggtgttcgacctggatccaggcccggac
gtgcctttcgccgaggtcaagcgcgccgccaccgacatccgcaagctgctcgcgcaactg
gagctggaatcgttcctgcgcgtgtccggcggcaagggcctgcacgtggtggtgccgctg
gcgccgggctgcgactgggacctgaccaagcgcttcgcccacggcttcgccgacgcactg
gcgcagtcgcaacccgagcgcttcctcgccaccgccagcaagcgcctgcgcaaccagcgc
atcttcgtcgactatttgcgcaacggccgcggcgccaccgcggtggcctcgtactcgcta
cgcgcccgcgccggcgcgccggtggcgatgccgttggcctggagcgacctgtccaagctg
caccgcgccgacgccttcaagctgcgcgacgtcccggccaagctgaaacggcgccgcaag
gatccgtgggccggcatcgacgcgctgaagcagaacctgtcgcgctgggccgaaacggag
tga
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