Xanthomonas sontii: RAB70_16340
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Entry
RAB70_16340 CDS
T10538
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xso Xanthomonas sontii
Pathway
xso03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RAB70_16340 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xso03400
]
RAB70_16340 (mfd)
Enzymes [BR:
xso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RAB70_16340 (mfd)
DNA repair and recombination proteins [BR:
xso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RAB70_16340 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Cas3-like_C_2
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
XCI83800
LinkDB
All DBs
Position
3878422..3882102
Genome browser
AA seq
1226 aa
AA seq
DB search
MPPLPFPVPPLPKSGQLRAHWRAPASSTALAWHIACAASAHRGPLLVVARDNQSAHQLEA
DLHSLLGDDPSLPVVPFPDWETLPYDQFSPHPDIVSQRLAALHRLPTLTQGIVVVPVQTL
MQRVAPLRYIVGGSFDLRVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVYP
MGTDAPLRIELLDEDIDSIRAFDPESQRSLDHVQAVRMLPGREVPMDDVSVERVLTALRE
RFDVDTRRSALYQDLKAGLAPSGIEYYLPLFFQDTRSSGAREATATLFDYLGEHVLPLIA
PGVGAAADAFWAQTQARYEQRRHDVERPLLAPEELYQAPDALRERLNGLPRIDVWAADHP
RIDEAQALGDQPLPPLPVAAKDAAPGAALKSFLDHYPGRVLIAADSPGRREALLEVLAAA
ELKPEVLPNFAAFVPSPTGRRWREAPDEGAASARSGTKKEGAKAGASASSTVAQTNSTSG
RTLTPTPLPEGEGLDSGEIGARFAIAVAPLDDGFALEAPRIAVLTERQLFPERASQPRRS
RRVGREPEAIIRDLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLY
VPVAQLHLISRYSGASAETAPLHSLGGEQWTKAKRKVAEKVRDVAAELLEIQARRQARAG
LALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVR
AAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKSSKEIKAELEKVA
AGSIDVIVGTHRLLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIP
RTLNMAMAGLRDLSIIATPPPNRLAVQTFVTQWDNALLREAFQRELARGGQLYFLHNDVE
SIGRMQRELSELVPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNA
NTIVINRADRFGLAQLHQLRGRVGRSHHRAYAYLLVPDRRSITPDAQKRLDAIASMDELG
AGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEA
RGAEVELHVPALIPDDYLPDVHTRLTLYKRISSARDSDGLRELQVEMIDRFGLLPDPVKH
LFAIAELKLQANVLGIRKLELGEHGGRLVFEAKPNVDPMTIIQMIQKQPKLYAMDGPDKL
KLKLPLPEAADRFNAARGLLTALSPR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgccgccccttcccttccccgttccgccgctgcccaagtccggccagctccgcgcgcac
tggcgcgcccccgcgtcctccaccgccctggcctggcacatcgcctgcgccgcgtccgcg
caccgcgggccgttgctggtggtcgcccgcgacaaccagagcgcgcaccagctcgaagcc
gacctgcacagcctgctcggcgacgatcccagcctgccggtggtgccgttcccggactgg
gaaaccctgccctacgaccagttcagtccgcacccggacatcgtcagccagcgcctggcc
gcgctgcaccggctgccgacgctgacccagggcatcgtggtggtaccggtgcagacgctg
atgcagcgggtggcgccgctgcgctacatcgtcggcggcagtttcgacctgcgcgtgggc
cagcgcctggacctggatgcggagaagcggcgactggaaagcgcgggataccgcaacgtg
ccgcaggtgatggacccgggcgacttcgccgtgcgcggcggcctgctcgacgtgtatccg
atgggcaccgacgcaccgctgcggatcgaactgctggacgaggacatcgattcgatccgc
gccttcgacccggaatcgcagcgctcgctggaccatgtgcaggcggtgcgcatgctgccc
gggcgcgaagtgccgatggacgacgtcagcgtggagcgggtattgaccgcgctgcgcgaa
cgcttcgacgtggacacccggcgcagtgcgctgtaccaggacctgaaggccgggctggcg
ccgtcgggcatcgagtactacctgccgctgttcttccaggacacccgcagcagcggcgca
cgcgaggccaccgccaccttgttcgattatctgggcgagcacgtgctgccgctgatcgcc
ccgggcgtgggcgccgcggccgatgcgttctgggcgcagacccaggcccgctacgagcag
cgccgccacgacgtggagcgcccgctgctggcgccggaggagctgtaccaggcgccggac
gcgctgcgcgagcgcctcaacgggctgccgcgcatcgacgtgtgggccgccgaccacccg
cgcatcgacgaggcacaggcgctgggcgaccagccgctgccgccgctgccggtggcagcc
aaggacgccgcgccgggcgcggcgctgaagagcttcctcgatcactacccgggccgggta
ctgatcgccgccgattcgcccggccgccgcgaggcgctgctggaagtattggcggccgcg
gagttgaagccggaggtgctgccgaatttcgcggcatttgttccttctcccaccgggaga
aggtggcgcgaagcgccggatgagggtgcggcgtctgcgcggtcgggaacgaagaaggag
ggtgctaaggcgggtgcttcggcaagttccacggttgcgcagacgaactccactagcggt
cgtaccctcaccccaacccctctcccggagggagaggggctcgactccggcgagatcggt
gcacgcttcgccattgcggttgcgccgctcgacgacggcttcgcgctggaggcgccgcgg
atcgcggtgctgaccgagcgccagttgttccccgagcgtgccagccaaccgcggcgcagc
cggcgtgtggggcgcgagccggaagcgatcatccgcgacctcggcgagctgtccgagggc
gcgccgatcgtgcacgaggaccacggcgtcggccgctaccgcgggctgatcgtgctcgat
gccggcggcatgcccggcgagttcctggaaatcgaatacgccaagggcgaccggctgtac
gtgccggtcgcgcagctgcatctgatcagccgctactccggcgcctcggccgagaccgcg
ccgctgcattcgctgggcggcgaacaatggaccaaggccaagcgcaaggtcgccgagaag
gtgcgcgacgtagccgcggagctgctggagatccaggcgcgccgccaggcccgtgccgga
ctggcgctgcaggtggaccgggcgatgtacgagccgttcgccgccggcttcccgttcgag
gaaaccccggatcagctggccgcgatcgacgccaccctgcgcgacctggccagcagccag
ccgatggaccgcgtggtctgcggcgacgtcggcttcggcaagaccgaggtcgcggtgcgc
gcggccttcgccgcggccagcgccggcaagcaggtggcggtgctggtgccgaccacgctg
ctggccgaacagcactaccgcaacttccgcgaccgcttcgccgactacccgctcaaggtc
gaggtgctgtcgcgcttcaagagcagcaaggagatcaaggccgagctggagaaggtcgcc
gccggcagcatcgatgtgatcgtcggcacccatcgcctgctgcagccggacgtgaagttc
aaggacctgggcatggtcatcgtcgacgaagagcaacgcttcggcgtgcgccagaaggaa
gcgctgaaggcgctgcgcgccaacgtgcacctgctgaccctcaccgccacgccgattccg
cgcaccttgaacatggccatggccggcctgcgcgacctgtcgatcatcgccacgccgccg
ccgaaccggctagcggtgcagaccttcgtcacccagtgggacaacgcgctgttgcgcgaa
gccttccagcgcgaactggcgcgcggcggccagctgtacttcctgcacaacgacgtggag
agcatcggccgcatgcagcgcgagctgagcgagctggtgccggaggcgcgcatcggcatc
gcccacgggcagatgcccgagcgcgagctggaaaaggtgatgctggatttccagaagcag
cgcttcaacgtgctgctgtcgaccacgatcatcgaatcgggcatcgacatccccaacgcc
aacaccatcgtcatcaaccgcgccgaccgcttcggcctggcgcagttgcaccagttgcgc
ggccgcgtcggccgctcgcatcaccgcgcctacgcctatctgctggtgccggaccggcgc
agcatcacccccgatgcgcagaagcggctggacgccatcgcctcgatggacgaactgggc
gccggcttcaccctggccacccacgatctggagatccgcggcgccggcgaactgctgggc
gaggaccagagcgggcagatggccgaggtcggcttcagcctgtacaccgaactgctggaa
cgcgcggtgcgcagcatccgccagggcaagctgccggacctggacgccggcgaggaagcg
cgcggcgccgaggtggaactgcatgtgcccgcgctgatccccgacgactacctgcccgac
gtgcatacccgcctgaccctgtacaagcgcatttccagcgcccgcgacagcgacggcctg
cgcgaactgcaggtggagatgatcgaccgcttcggcctgctgccggatccggtgaagcac
ctgttcgcgatcgccgaactgaagctgcaggccaacgtgctgggcatccgcaagctggaa
ctgggcgagcacggcgggcgcctggtgttcgaggccaagcccaacgtggatccgatgacc
atcatccagatgatccagaagcagcccaagctgtatgcgatggatggcccggacaagctg
aagctcaagctgccgctgccggaagcggccgaccgcttcaatgccgcgcgcggcctgctg
accgcgctgtcgccacgctga
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