Xenorhabdus taiwanensis: TCT1_11880
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Entry
TCT1_11880 CDS
T11488
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
xta Xenorhabdus taiwanensis
Pathway
xta03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TCT1_11880 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xta03400
]
TCT1_11880 (uvrB)
DNA repair and recombination proteins [BR:
xta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TCT1_11880 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TCT1_11880 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
SBDS_domain_II
AAA_22
DUF87
BNI5_helical
Motif
Other DBs
NCBI-ProteinID:
BET96267
UniProt:
A0ABN7C235
LinkDB
All DBs
Position
1365894..1367921
Genome browser
AA seq
675 aa
AA seq
DB search
MSKETSKVFKLHSDFKPAGDQPSAISQLQEGLEDGLAHQTLLGVTGSGKTFTIANVIANL
NRPTMILAPNKTLAAQLYSEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVN
EHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDSYLKMMLHLTEGMLIDQRAILRRL
AELQYTRNDQAFQRGTFRVRGEVIDIFPAESDERALRVELFDDEVERLSLFDPLTGQVEY
HVPRYTIYPKTHYVTPRERILQAMEEIKIELEQRRKILLASDKLLEEQRVTQRTQFDLEM
MNELGYCSGIENYSRYLSGRSAGEPPPTLFDYLPAEGLLVVDESHVTIPQIGGMYRGDRS
RKETLVEYGFRLPSALDNRPLRFEEFEALAPQSIYVSATPGNYELEKSGHEVVEQVVRPT
GLIDPEVEVRPVATQVDDLLSEIRIRAANNERVLVTTLTKRMAEDLTEYLEEHGERVRYL
HSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI
QTIGRAARNLHGKAILYGDKITDSMARAIEETERRRAKQQAFNQEHGIIPQGLKKKIGDI
LKIGQPVNGKGKAKGKSKVALGTDDYYNLPAKELERKIRELEEKMYQHARDLEFEQAANI
RDQVQALRAQFITNS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagaaacgagtaaggtattcaagttacactctgattttaagccggcaggcgat
cagccatcagccattagtcagttacaggaagggctggaagatggactggcccatcaaacc
cttctgggagtcacgggatcgggtaaaactttcacgattgccaatgttatcgcaaactta
aatcgacccactatgatccttgctcccaataaaacactggcggcacaactctatagtgaa
atgaaagcgtttttccctgagaatgccgtggaatattttgtttcctattacgattattac
caaccagaagcctatgtgcccagttccgatacctttattgaaaaagatgcttcagtgaat
gaacatatcgaacagatgcgactgtccgcaacgaaagccttgttggaacgccgtgatgtc
gtcgtggtagcttctgtctccgcgatttacggtttaggtgatcctgatagctatttgaaa
atgatgcttcatttaactgagggcatgttaattgatcagcgtgccatcttgcgtcgttta
gcggaactacaatatacccgtaatgatcaggcattccagcgcggaacatttcgggtgcgt
ggtgaagttatcgatattttccccgcagaatcggatgaacgtgctttgcgcgtagaattg
tttgatgatgaagtcgaacgcctttccctgtttgatccgttgacgggacaggtagaatac
catgtaccgcgttataccatctatcccaagacccactatgtgacaccgcgtgaacgtatc
cttcaggcaatggaggagatcaagattgagttggaacaacggcgcaagattttgttagcg
tcggacaagctattggaagaacagcgtgtcacccaacgaacccaattcgatctcgaaatg
atgaatgaattgggttattgctctggtattgaaaactactcccgttatctgtctggacgt
tctgccggtgaaccacccccaacgctgtttgactacctgccagcagaggggttgctggtg
gtggatgaatcccacgtcaccattccacagattggtggaatgtaccgaggggatcgctcc
cgcaaggaaacattggtggaatatggcttccgtttgccgtcagcgctggataaccgtccg
ttgcggtttgaggaatttgaggcgctggcaccgcagagcatttatgtttcagccacgccc
ggcaattatgaattagaaaaatcgggtcacgaagttgttgagcaagttgtgcgtccaaca
gggctaattgaccctgaagttgaagttcgaccagtggcaactcaggtagatgatctgctg
tctgaaattcgtatccgtgcggcaaacaatgaacgagtgttggtcacaaccttaaccaaa
cgcatggcggaagacttgactgagtatttggaagagcatggcgagcgagtgcgttatctc
cattctgacattgatactgtagagcgagtggaaattatccgtgatcttcgtctcggtgaa
tttgatgttttggttggcattaacttactgcgcgaaggtttggatatgccggaagtttcc
ctggtggcaattttggacgcagataaagaaggtttccttcgttcagaacgttccctgatc
cagaccattggtcgtgcagcacgtaacctgcatggtaaggccattttatatggtgacaaa
attacggattcgatggcaagagctattgaagaaacagaacgtcgtcgtgctaaacagcag
gcatttaaccaagaacacggcattataccgcaaggtttgaagaaaaaaattggtgatatc
ctgaaaattggtcagccggttaatggcaaagggaaggccaaaggaaaaagtaaagtggcc
ttgggtacagatgattactacaacctgccggcgaaagagctggagagaaaaatccgtgaa
ctggaagagaaaatgtaccaacatgcacgggatcttgaatttgagcaagcagccaatatt
cgtgaccaggttcaggcattgcgggcgcaatttattactaattcttga
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integrated database retrieval system
