Xanthomonas theicola: G4Q83_08375
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Entry
G4Q83_08375 CDS
T06965
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xth
Xanthomonas theicola
Pathway
xth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G4Q83_08375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xth03019
]
G4Q83_08375
03009 Ribosome biogenesis [BR:
xth03009
]
G4Q83_08375
Enzymes [BR:
xth01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G4Q83_08375
Messenger RNA biogenesis [BR:
xth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G4Q83_08375
Ribosome biogenesis [BR:
xth03009
]
Prokaryotic type
rRNA processing factors
G4Q83_08375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
QNH24757
LinkDB
All DBs
Position
1824206..1827703
Genome browser
AA seq
1165 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTVEMYGDAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALRYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLHTPH
YEVTRLRENELAEESAKPSYQRNTPRKLPVHTLTKAQLNIPTAPAVTHVKHSQPAPVREV
VDVPEPVAAPAPVPAPVPVAVPASGVVGWLKRIFGAGESPAPVPAASEPAQRQRAHDGNR
NRNDRGERNARRDGSRNGGQGGNAARGNGNVRRDERRPSNGGGNVQGGQPHLAAKPPRNE
QAPQQAKPQQPKAPRQQPQNPPRQPKPQQEPVQALAHSDKPQRQPRPDEGVAKPATAPAA
ATAAQDATTIAVAVLAGGGAALSSEAPASEVNSSTIAAPVAAPQASAAQVSVDERESAAE
TAQAVPVGDNGDNGEADEASAEAGGRRRRGRRGGRRRRRGNSDAGSGSGSEAAGLDDIEL
DAGDSDGETTPAPSRSQPEFDFDDDAVLAESAAAKPQQALRAPREKRGPQPRRERAAAQA
SDTAVAGALPPTEANVAPAQATPVAAAAAITAAPAVAAPLPVANAPAAPVRPPVAAAPLP
PVSEAPGARAEAMPAPTPAPPSRTEPATIDPRPIDAAGPSAPVVEQPAPLAAATPAAEAD
ADAAPVTPADAPATVSRSAAGPQQNAAAAPPPLAEEKARAKPAYAPMQTTLLDALPEQAA
ATVEPGPAPTQAPVAAAAVPKDGSESGRASDAAPASAAAAGGTGLFGAPPAPATNAPVAV
AQQQPHNKADSGESDDHQKHKERAS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggcggaagagctgcgtgtggccatcgtggac
ggccagaccctgtacgacatcgacatcgagcagccgtccaaggaacagaagaagtccaac
atctacaagggccgcatcacccggctcgaaccctcgctcgaagcggccttcgtcgaatac
ggcggcgagcgccacggcttcctgccgctgaaggaaatctcccgcgattactttcaggcc
ggcgtcgaccacaacaaggcgacgatccgcgagctgctgcgcgagggccaggaagtggtg
gtccaggtggacaaggaagaacgcggcaacaagggcgccgcgctgaccacgttcatctcg
ctggcgggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtctcgcgc
cggatcgagggcgaggaccgcgccgcgctgaaggaagcgctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgacgccgaagagttgcag
tgggatctggactacctgctgcaggtgtggaagtcgatcgccgaggccgcgctggccaag
ccggcgccgttcctgatctaccaggaatcgcggctgatcatccgcgccctgcgcgactac
ctgcgcgccgacatcggcgagatcctggtcgataccgtcgagatgtacggcgatgcccag
gagttcatgcagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgat
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaggcggcctacgagcgcagc
gtgcgcctgccgtccggcggctcgatcgtggtcgaccagaccgaggcgctgaccgcggtg
gacgtcaactcctcgcgcgcgaccaagggcagcgacatcgaggacaccgcgtttcagacc
aacctggaggcggccgaagaggtcgcgcgccagctgcgcctgcgcgacctcggcggcctg
gtggtcatcgacttcatcgacatggcctccaacaagcaccagcgcgaggtcgagaaccgc
ctgcagaacgcgctcaggtacgatcgcgcgcgggtgcagatcggccgcatctcgcgtttc
ggcctgctcgagatgagccgccagcgcctgcgcccgtcgctgggcgagtccagccagatc
gtgtgcccgcgctgcgacggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtcgccgaagagcacgcgatgaaggagaacaccgggcaggtgctggtgcag
gccccggtggagatcgccaactacctgctcaacgagaagcgccgcgcgctcagcgagatc
gagaagcgccacgacgcgccgatcgtcatcgtcgccgacgagcagttgcacaccccgcac
tacgaagtgacccgcctgcgcgagaacgaactcgccgaggaaagcgccaagcccagctac
cagcgcaacaccccgcgcaagctgccggtgcacacgctgaccaaggcgcagctgaacatt
ccgaccgcgcccgccgtgacccatgtgaagcattcacagccggccccggtgcgcgaagtg
gtcgacgtgccggaaccggtcgccgcccccgcgccggtcccggcgcccgtgcccgtcgcc
gtccccgccagcggcgtggtcggctggctgaaacggatcttcggcgccggcgaaagcccg
gcgccggtgccggccgcgagcgaaccggcacagcggcagcgcgcccacgacggcaaccgc
aaccgcaacgaccgcggcgagcgcaacgcgcgccgcgacggcagccgcaacggcggccag
ggtggcaacgccgcgcgcggcaacggcaacgtccgccgcgacgagcgccgtccaagcaat
ggcggcggcaacgtgcagggtggccagccgcaccttgcggccaagccgccgcgcaacgag
caggcaccgcagcaggccaagccgcaacagcccaaggcgccgaggcagcagccgcagaac
ccgccgcgccagcccaagccgcagcaggaaccggtacaagccctggcgcacagcgacaag
ccgcagcgccagccgcgtccggacgagggcgtggccaagcccgccacggcaccggcggcc
gccactgcagcgcaggatgccaccacgatcgcggtggctgtcctggccggtggtggcgcc
gcactgagcagcgaggcgccggccagcgaggtcaacagcagcaccatcgccgcaccggta
gccgcgccgcaagcgagcgcggcacaggtgagcgtcgacgaacgcgagagcgcagcggag
accgcgcaggccgtcccggtcggcgacaatggcgacaatggcgaagccgacgaggccagt
gccgaggccggtggccgccgccggcgcggccggcgcggcggccgacgccgtcgtcgcggc
aacagcgacgccggcagcggcagcggcagtgaagcggcgggattggacgacatcgaactg
gatgccggcgacagcgacggcgaaaccacgccggcgccgagccgcagccagcccgagttc
gacttcgacgacgatgccgtcttggccgaaagcgccgccgccaagccgcagcaggcgctg
cgcgcgccgcgggaaaagcgcgggccgcagccgcgccgcgagcgtgcggccgcgcaggcg
tcggacaccgccgttgcgggggcgttgccgccaaccgaagccaacgtcgctccggcccaa
gcgacgccggttgccgcagccgcagcgatcacagcggctcctgccgttgccgcaccgctg
cctgtcgccaacgcgccggcagcgccggtgaggccaccggtcgcggcagcgccgttgccg
cccgtcagcgaggcgccgggcgcgcgcgccgaggcaatgcctgcgccgacaccagcgccg
ccgtcgcgcactgagccggccaccatcgatccgaggccgatcgacgctgccgggccgtcg
gcgcctgtcgtcgagcagcccgctccgctcgccgcagcgacgccggcggcggaagcggat
gccgacgcagcaccggtcacgccggccgacgcgccggcgacggtctccaggtcggccgcc
gggccgcagcagaacgctgcagcggcgccgccgccgctggccgaggaaaaagcacgcgcc
aagccggcctatgcgccgatgcagaccacgctgctggacgccctccccgagcaagcggcc
gccacggtcgaacctggaccggcgccgacccaggcaccggtcgcagcggcagcggtaccg
aaggacggcagcgagagcggccgcgccagcgacgccgcaccggcgtccgctgcggcggcc
ggcggtaccggcctgttcggcgcaccgcccgcgccagcgacgaatgcaccggtcgccgtt
gcccagcagcagccgcacaacaaagcagacagcggcgagagcgacgaccaccagaagcac
aaggagcgcgcaagctga
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