Xanthomonas theicola: G4Q83_09190
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Entry
G4Q83_09190 CDS
T06965
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xth
Xanthomonas theicola
Pathway
xth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G4Q83_09190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xth03019
]
G4Q83_09190
Enzymes [BR:
xth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G4Q83_09190
Messenger RNA biogenesis [BR:
xth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G4Q83_09190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QNH24888
LinkDB
All DBs
Position
1992550..1993917
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AA seq
455 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQLQAIPLALQGHDLMAGAQTGTGKTAAFGLPLL
QHLGTTPQPVGPGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSTTIYGGVGMGNQL
DALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEEGIKQLAREFMHDPQEIQATPSNTVADTITHRVHPVDGTRKRELLLH
LLAADSRKQTLVFARTKHGADKLTMFLDKSGLKAAAIHGNKSQGQRLRALSDFKAGRITV
LVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSQGEAVSLVAQDEAKLLR
AIARMLKRDMDIRDVPGFEPVTPIRWGNNNPADERPGGQRPPRKGSHARRPHGDAPSHAH
AGPKKPGGSQPNGGRRQAQERRQGNGGSRRPSATR
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgaatccctgggcctggcgcccttcctgctgcgtgcattggccgagcagggc
tacgaaacccccaccccgatccagttgcaggcgatcccgctggcgctgcagggccacgac
ctgatggccggcgcgcagaccggcaccggcaagaccgccgcgttcggcctgccgctgctg
cagcacctgggcaccacgccgcagccggtcggccccggcccgcgcaagccgcgcgcgctg
atcctgaccccgacccgcgagctggccacccaggtgcacgacagcctgcgcggctacagc
aagtacctgcgcatccccagcaccaccatctacggcggcgtcggcatgggcaaccagctc
gacgcactgcgccgcggcgtggacctgctgatcgcctgcccgggccgcctgctcgatcac
ctcgagcgccgcagcgtggacctgtcgggcatcgagatcctggtgctggacgaggccgac
cgcatgctcgacatgggcttcctgccctcgatcaagcgcatcctggccaagctgcccaag
cagaaccggcagaccctgctgttctcggccaccttcgaggaaggcatcaagcagctggcc
cgcgagttcatgcacgacccgcaggaaatccaggccacgccgagcaacaccgtcgccgac
accatcacccaccgcgtgcacccggtcgacggcacgcgcaagcgcgaactgctgctgcac
ctgctggccgccgattcgcgcaagcagaccctggtgttcgcgcgcaccaagcacggcgcc
gacaagctgaccatgttcctggacaagtccgggctgaaggccgccgcgatccacggcaac
aagagccagggccagcgcctgcgcgcgctgagcgatttcaaggccggccgcatcacggtg
ctggtggcgaccgacatcgccgcgcgcggcatcgacatcgaccagttgccgaaggtcatc
aactacgacctgccgatggtcgcagaggactacgtgcaccgcatcggccgcactggccgc
aacggctcgcagggcgaggcggtgtcgctggtggcgcaggacgaggccaagctgctgcgc
gcgatcgcacgcatgctcaagcgcgacatggacatccgcgacgtgccgggcttcgagccg
gtcacaccgatccgctggggcaacaacaatccggccgacgagcgtccgggcgggcagcgt
ccgccgcgcaagggcagccacgcgcgccgcccgcacggcgatgcgccgtcgcatgcgcat
gccggcccgaagaaaccgggcggcagccagcccaacggcggacgccgccaggcccaggaa
cgccgccagggcaacggcggcagccgccggcccagcgccacgcgctga
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