Xanthomonas theicola: G4Q83_13595
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Entry
G4Q83_13595 CDS
T06965
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xth
Xanthomonas theicola
Pathway
xth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G4Q83_13595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xth03019
]
G4Q83_13595
03009 Ribosome biogenesis [BR:
xth03009
]
G4Q83_13595
Enzymes [BR:
xth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G4Q83_13595
Messenger RNA biogenesis [BR:
xth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G4Q83_13595
Ribosome biogenesis [BR:
xth03009
]
Prokaryotic type
rRNA helicases
G4Q83_13595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QNH25579
LinkDB
All DBs
Position
complement(2901584..2903590)
Genome browser
AA seq
668 aa
AA seq
DB search
MSQDTPAPLPFADLGLSPAVMKAVSDVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKT
AAFALPILSRLDFNQRKPQALVLAPTRELAIQVAEAFHRYAASIPGFQVLPVYGGQPYVQ
QLSALKRGVHVVVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PASRQVALFSATMPSAIKRIAQTYLHDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALT
RILEVEPFDAMIVFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPREKGML
RAIERATRQPIEEMQLPSVDAVNDQRVTRFMEKIGETIASGGIDTYRELLQRFETEKNVP
MVEVAAALARLLQGDTPLLLAPERPRPPQGERRFERPGVERRERADRGERPERARFEPKS
ERGARPPHRDEGERGPRPPRPAPAGHGPDFDYQRDVGSFEAPRRDKAAKAPRAAPEVGME
TYRIEVGHQHGVKPANIVGAIANEAGLESKYIGRIDIHDDHSVLDLPADMPRELLTHLKK
VWVSGQQLQMRKLDCAAAGGAPFKPKFARAGGKPGGRPNAAGPRPAGAASRLADKAGERP
PRKGPPKR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagatacccccgcgccgctgccgttcgcagacctcggcctctcgcctgctgtg
atgaaggcggtctccgacgtcggctacgaatccccgtcgccgatccaggccgccaccatc
cccgcgctgctgaccggccgcgacctgctcggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccgatcctgtcgcggctggatttcaaccagcgcaagccgcaggcg
ctggtgctggcgccgacccgcgagctggcgatccaggtcgccgaggcgttccaccgctat
gccgcgtcgatccccggcttccaggtgctgccggtgtacggcggccagccctacgtccag
cagttgtcggcgctcaagcgcggcgtgcacgtggtggtgggcacccccgggcgggtcatc
gaccacctggagcgcggcaccctggacctgtcggagctgaagacgctggtgctcgacgag
gccgacgagatgctgcgcatgggcttcatcgacgatgtcgaggcggtgctgaagaagctg
ccggcctcgcgccaggtggcgctgttctcggcgaccatgccgagcgcgatcaagcgcatc
gcgcagacctatctgcacgatccggccgaagtcatcatcgcttccaagaccaccacctcg
gcgaacatccgccagcgctactgggcggtcagcgggctgcacaaactcgatgcgctgacc
cggatcctggaagtggagccgttcgacgcgatgatcgtgttcgcgcgcaccaaggccggt
accgacgagctggcgcagaagctgcaggcgcgcggcctggccgccgcggcgatcaacggc
gacatccagcaggcgcagcgcgagcgggtgatccagcagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggagcggatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgcgccggccgcagcggcgaggcgatcctgttcgtcagcccgcgcgagaagggcatgctg
cgcgcgatcgagcgcgccacccggcagccgatcgaggagatgcagctgcccagcgtggac
gcggtcaacgaccagcgcgtgacccgcttcatggagaagatcggcgagaccatcgccagc
ggcggcatcgacacctaccgcgaactgctgcagcgcttcgagaccgagaagaacgtgccg
atggtcgaggtggccgcggcgctggcgcggctgctgcagggcgacacgccgctgctgctg
gcgccggagcggccgcgtccgccgcagggcgagcggcgtttcgagcggcccggcgtcgag
cggcgcgagcgcgccgaccgcggcgagcgcccggaacgcgccaggttcgagccgaagtcc
gagcgcggggcgcgtccgccgcaccgcgacgagggcgaacgcgggccgcgcccgccgcgt
cccgcgccggccggccatggccccgatttcgactaccagcgcgacgtcggcagcttcgag
gcgccgcgccgcgacaaggccgccaaggcgccgcgcgccgcgccggaagtgggcatggaa
acctaccgcatcgaggttggccaccagcacggagtcaagccggccaacatcgtcggcgcg
atcgccaacgaggccggcctggagagcaagtacatcggccgcatcgacatacacgacgac
cactcggtgctggacctgccggcggacatgccgcgcgagctgctgacccacctgaagaag
gtgtgggtctccggccagcaactgcagatgcgcaagctcgactgcgccgccgccggcggc
gcgccgttcaagccgaagttcgcgcgtgccggcggcaagcccggcggccgaccgaacgcg
gccggtccgcgcccggccggcgccgccagccgcctcgccgacaaggccggcgagcgtccg
ccgcgcaagggtccgccgaagcgctga
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