Xanthomonas theicola: G4Q83_16065
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Entry
G4Q83_16065 CDS
T06965
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
xth
Xanthomonas theicola
Pathway
xth02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xth00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G4Q83_16065 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xth03021
]
G4Q83_16065 (rpoD)
Transcription machinery [BR:
xth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G4Q83_16065 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QNH25965
LinkDB
All DBs
Position
complement(3433858..3435720)
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AA seq
620 aa
AA seq
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MANERPAQQSDIKQLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIIGMINGMGIDVHE
VAPDAETLLLNDGNTGNREVDDTAAEEAAAALTALDTEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLGQVQAALGAFPLAVESLLEDYEQHKEGKKRLAEIVVGFNDLIEEE
PAPPPVVAASDDDAADADADDADDDVDTAEEDAGPTGPDPAEVARRMDLLASEYAKFKKA
HAKNGAEHKLVTKLRTDIAEVFVTLKLPLPLTDVLVRKLRATMAQVKDHERRVLHLATHV
ARMPRKDFIRSWEGNQTNVAWVDDALKRKQKWSSALREVKEQIVAEQEATVAAERATYLS
LTELKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQY
GREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIEN
TTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSEQLRSFLDID
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccagcaatccgacatcaagcaactgatcagcaagggcctg
gaacagggctatctgacctacgccgaagtcaacgaccacctccccgacgacctggtcgat
cccgaacagatcgaagacatcattggcatgatcaacggcatgggcatcgatgtccatgaa
gtcgcccccgacgcagagaccctgctgctcaacgacggcaacaccggcaaccgcgaagtc
gacgacaccgccgccgaagaagccgccgccgcgctgaccgcgctcgacaccgagggtggc
cggaccaccgacccggtgcgcatgtacatgcgcgagatgggcacggtggagctgctgacc
cgtgaaggcgagatcgccatcgccaagcgcatcgaggaaggcctcggccaggtccaggcc
gcgctgggcgcgtttccgctggcggtggagagcctgctcgaggactacgagcagcacaag
gaaggcaagaagcgcctggctgagatcgtggtcggcttcaacgacctgatcgaagaagag
ccggcgccgccgccggtggtggccgccagcgacgacgatgccgccgatgccgatgccgac
gatgcggacgacgatgtcgacaccgccgaggaggacgccggcccgaccggcccggatccg
gccgaggtcgcgcggcgcatggacctgctggccagcgaatacgccaagttcaagaaggcg
cacgccaagaacggggccgagcacaagctggtcaccaagctgcgcaccgacatcgccgag
gtgttcgtcaccctgaagctgccgctgccgctgaccgacgtgctggtgcgcaagctgcgc
gccaccatggcccaggtcaaggaccacgagcgccgcgtgctgcacctggccacccacgtg
gcgcggatgccgcgcaaggacttcatccgctcctgggaaggcaaccagaccaacgtggcc
tgggtcgacgacgcgctgaagcgcaagcagaagtggtcgtcggcgctgcgcgaggtcaag
gagcagatcgtcgccgagcaggaagccaccgtggcggcggagcgggcgacctacctgagc
ctgaccgaactgaaggaaatcagccgcgcgatggcctacggcgaagccaaggcgcgcaag
gccaagaaggagatggtcgaggccaacctgcgcctagtgatctcgatcgccaagaagtac
accaaccgcggcctgcagttcctcgacctgatccaggaaggcaacatcgggctgatgaag
gcggtggacaagttcgagtaccgccgcggctacaagttctccacatatgcgacctggtgg
atccgccaggccatcacccgttccatcgccgaccaggcgcgcaccatccgtatcccggtg
cacatgatcgagacgatcaacaagttgaaccgcatttcccggcagatgctccagcagtac
ggccgcgaggccacgccggaggaactggccaaggaaatggacatgccggaggacaagatc
cgcaaggtgatgaagatcgccaaggagccgatctcgatggaaaccccgatcggcgacgac
gaggattcgcatctgggcgacttcatcgaggacaccaacgtggagtccccgatcgagaac
accaccaacatcaacctgtccgagaccgtgcgcgacgtgctcgccgggctgaccccgcgc
gaggccaaggtgctgcgcatgcgcttcggcatcgacatgaacaccgatcacacccttgag
gaagtcggcaagcagttcgacgtcacccgcgagcgcatccgccagatagaggccaaggcg
ttgcgcaagttgcgccatcccagccgctccgaacagctgcgcagcttcctcgacatcgac
tga
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