Xanthomonas translucens pv. undulosa: FD63_05230
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Entry
FD63_05230 CDS
T03961
Name
(GenBank) DEAD/DEAH box helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xtn
Xanthomonas translucens pv. undulosa
Brite
KEGG Orthology (KO) [BR:
xtn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtn03019
]
FD63_05230
Enzymes [BR:
xtn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FD63_05230
Messenger RNA biogenesis [BR:
xtn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FD63_05230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
AAA_30
AAA_25
NACHT
SRP54
T2SSE
AAA_23
TsaE
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AKK66923
LinkDB
All DBs
Position
1174412..1178536
Genome browser
AA seq
1374 aa
AA seq
DB search
MSTIEKHLATRLRERRDAIDAALTRDRGRLFGLWSRWQAAPGNPALEAAFEQALGQSRAR
CQARAAAAPAITLDDQLPIAREAERIVALIRAHQVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRIAARAVAARVAEELRTPVGGAVGFQVRFNDRVGEETRIKFMTDGILLA
EIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPELKVIVTSATIDTARFAEH
FDGAPVISVEGRTFPVEVRYRPLEGECGGADGEGEDRAGERTVNDAIVAAVDEITRLDPR
GDVLLFLPGEREIRDAHQALERRKYRETEVLPLYARLSNSDQDRVFNPGPRRRLVLATNV
AETSLTVPRIRYVVDPGYARVKRYSPRQKLDRLHIEPISQASANQRKGRCGRVAEGICYR
LYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEDFPFLEPPDERAVADGWQQLV
ELGAVGEPDRHGLRKLTEIGRKMARLPVDVKLARMLVAAQQHGCLRPMLVIAAFLGIQDP
RERPPEAREAADNAHATFADARSEFVGILRLWDGYRQAHEELTQSKLRDWCGRHFLGFLR
MREWRELHRQLHLLCEELGWSEEPASASLQPLLAGAASPPPARDAETSARATRGQLHRAA
RLAREGRSEPAAVAPVAARPAPPANATGDAPRASERERAAAYHALHRALLAGLPTQVGHR
TEKGDFLAPRQRRFLLFPGSTLARKPPPWVLPATLLDTQKVWGMTNAAVEPDWVIAELPH
LLARKHFDPHWSRAQGQVLASEQISLFGLVLAPKKPVHYGRIDPPGAHELFVRQGLVPGE
IDTRASFVADNQKVLAQAHEEEAKLRRAGIVADEDWQARWYLDRIPGELHSAAGLDAWWK
ALAPEQRRALHWSLTDLLPGEGSEADRYPKYFALGDARLALHYKFEPGAADDGVTLEVPM
HLLNALDAARLSWLAPGFVADKAAALIRSLPKALRRNYVPAPDFARAFYEAFPQPSADDI
RGELARFLQRATGAALSALDFDESALEPHLRMHLRLRDDAGKVLAESRDLEALRARFGDR
AGQAFAARAGREMAADGLREFPSAPIPLQVPGEAGVPAYPALVDTGEAAALRIFADRAQA
EAAHPRGVRRLLEIALADKVKQARKQLPVSPKTGLLYAAIESQERLRGDLVDAALNALLE
EGLDAIRDPGSFAQRRDAAGKQLFGEAMERLKLAEAIMGAAAELKPQLESPLMGWASGNL
DDLRAQLAALVHPGFLRETPATALAQFPRYLRAMILRAERAKRDPARDQARMLELKPFVD
ALAAAAAAGRSADPQWQALRWDLEELRVSLFAQELGAKAGISAKKLAQRVAGGR
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgatcgaaaaacacctggccacccgcctgcgcgagcgccgcgacgcgatcgac
gcggcgctgacccgcgaccgcggccggctgttcggcctatggtcgcgctggcaggccgcg
cccggcaatcccgcattggaggcagcgttcgagcaggcgctggggcaatcgcgggcgcgc
tgtcaggcgcgcgcggcagcggcgccggcgatcaccctggacgaccagttgccgatcgcg
cgcgaggccgagcgcatcgtggcgctgatccgcgcccaccaagttgtggtcatcgccggc
gagaccggctcgggcaagaccacgcagctgccgaagctgtgcctggccgccggccgcggc
gccgccggcatgatcggctgcacccagccgcggcgcatcgccgcgcgcgcggtggccgca
cgcgtggccgaggaattgcgcacgccggtgggcggggcggtgggcttccaggtgcgcttc
aacgaccgggtcggcgaggagacccggatcaagttcatgaccgacggcatcctgttggcc
gagatcgccagcgaccgctggctgtccagctacgacacgatcatcgtcgacgaggcgcat
gagcgcagcctcaacatcgatttcctgctcggctacctcaagcagctgctgcgcaaacgc
ccggagctgaaggtgatcgtgacctcggcaacgatcgacaccgcgcgcttcgccgagcat
ttcgacggcgcgccggtgatcagtgtcgagggccgcactttcccggtggaagtgcgctac
cggccattggagggcgagtgcggcggtgcggacggggagggcgaggaccgtgccggcgag
cgcacggtcaacgatgcgatcgtggccgcggtggacgagatcacccgcctggatccgcgc
ggcgacgtgctgctgttcctgcccggcgagcgcgagatccgcgatgcgcaccaggcgctg
gagcggcgcaagtaccgcgagaccgaagtgctgccgctgtacgcgcggctgtccaacagc
gatcaggaccgggtgttcaatcccggcccgcggcggcgcctggtgctggccaccaacgtc
gccgagacctcgctgacggtgccgcggatccgctacgtggtcgatccgggctatgcgcgg
gtcaagcgctacagcccgcggcagaagctggaccggctgcacatcgaaccgatttcgcag
gccagtgccaaccagcgcaagggccgttgcgggcgcgtggccgaaggcatctgctatcgg
ctgtacgccgaggccgatttccaggcgcggccggagttcaccgatccggagatccgccgc
tccagcctggccggggtgatcctgcgcatgctgcagctggggctggggcggatcgaggat
ttcccgttcctggaaccgccggacgagcgcgcggtcgccgatggctggcagcagctggtg
gaactgggcgcggtcggcgagcccgatcgccatggactgcgcaagctcaccgagatcggc
cgcaagatggcgcggctgccggtggacgtgaagctggcgcggatgctggtggccgcgcag
cagcacggttgcctgcggccgatgctggtgatcgccgcgttcctgggcatccaggacccg
cgcgaacgcccgccggaagcgcgcgaggcggccgacaacgcgcacgccacattcgccgat
gcgcgctcggaattcgtcggcatcctgcgcctgtgggacggctaccggcaggcgcacgag
gagctgacccagtccaagctgcgcgattggtgcgggcgccacttcctcggtttcctgcgc
atgcgcgaatggcgcgaactgcaccgccagttgcatctgctgtgcgaggaactgggctgg
agcgaggagccggcgagcgcgtcgttgcagccgctgctggccggtgccgcatcgccgccg
ccggcccgcgatgccgagaccagcgcgcgcgccacgcgtgggcaactgcatcgcgcggcg
cggctggcgcgcgaagggcgcagcgagccggcggcggtcgcgccggtcgctgccaggccc
gcgccgccggccaacgcaaccggcgacgcgccacgtgccagcgagcgggaacgcgccgcc
gcctaccatgccttgcatcgcgcgttgcttgccggcttgccgacgcaggtcggccatcgt
accgagaagggcgatttcctggcgccgcggcagcgccgcttcctgctgttccccggctcc
acgcttgcccgcaagccgccgccgtgggtgttgccggccacgctgctggacacgcagaag
gtgtggggcatgaccaatgccgcggtcgagccggactgggtcatcgccgagctgccgcac
ctgctggcgcgcaagcatttcgacccgcattggtcgcgcgcgcaggggcaggtgcttgcc
tccgagcagatcagcctgttcgggctggtgctggcgccgaagaagccggtgcattacggc
cgcatcgacccgcccggcgcgcacgaactgttcgtgcgccagggcctggtgccgggcgag
atcgatacccgcgccagcttcgtcgccgacaaccagaaagtgctggcgcaggcgcacgag
gaagaagccaagctgcgccgcgccggcatcgtcgccgacgaggactggcaggcgcgctgg
tacctggaccggattcccggcgaactgcattcggccgccggcctggacgcgtggtggaag
gcattggcgccggagcagcggcgcgcgctgcactggtcgctgaccgacctgctgccgggc
gaaggcagcgaggccgaccgctatccgaagtacttcgcgctgggcgacgcgcggctggcg
ctgcattacaagttcgaaccgggcgcggccgacgacggcgtgaccctggaggtgccgatg
cacctgctcaatgcgctggatgcggcgcggctgtcgtggctggcgccgggcttcgtcgcc
gacaaggcggcggcgttgatccgcagcctgcccaaggcgctgcgccgcaactacgtgccg
gcgccggacttcgcccgcgccttctacgaggcgttcccgcagcccagtgccgacgacatc
cgcggcgagctggcgcgcttcctgcaacgcgccaccggcgcggcgctgagcgcgctggac
ttcgacgaaagcgcgctggagccgcatctgcgtatgcacctgcggctgcgcgacgatgcc
ggcaaggtgctggccgaatcgcgcgacctggaggcgttgcgcgcgcgcttcggcgatcgc
gccgggcaggccttcgccgcacgcgccgggcgcgagatggctgcggacgggctgcgcgag
ttcccgtctgcgccgatcccgctgcaggtgccgggcgaggcgggggtgccggcgtatccg
gccctggtggacacaggcgaagccgcggcgctgcgcatcttcgccgaccgcgcgcaggcc
gaggcggcacatccgcgcggcgtgcgccggctgctggagatcgcgctggccgacaaggtc
aagcaggcgcgcaagcagctgccggtgtcgccgaagaccgggctgctgtatgcggcgatc
gagtcgcaggagcggctgcgcggcgatctggtcgatgcggcgttgaatgccttgctcgaa
gagggcctggacgcgatccgcgacccgggcagcttcgcccagcgccgcgatgcggccggc
aagcagttgttcggcgaggcgatggagcgattgaagctggccgaggcgatcatgggcgcg
gcggcggaattgaaaccgcagctggaatcgccgctgatgggctgggccagcggcaacctc
gacgacctgcgcgcgcagctggcggcgctggtgcatccgggcttcctgcgcgaaaccccg
gccacggcgctggcgcagttcccgcgctacctgcgcgcgatgatcctgcgcgccgaacgc
gccaagcgcgatccggcgcgcgaccaggcgcggatgctggaattgaagcccttcgtcgat
gcgctggccgctgccgccgcggccggacgcagcgccgatccgcaatggcaggcgctgcgt
tgggacctggaggaattgcgcgtgtcgctgttcgcgcaggaactgggcgccaaggccggg
atctcggcgaagaagctggcgcaacgggtggctggggggcggtga
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