Xanthomonas translucens pv. undulosa: FD63_09305
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Entry
FD63_09305 CDS
T03961
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xtn
Xanthomonas translucens pv. undulosa
Pathway
xtn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FD63_09305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtn03019
]
FD63_09305
03009 Ribosome biogenesis [BR:
xtn03009
]
FD63_09305
Enzymes [BR:
xtn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FD63_09305
Messenger RNA biogenesis [BR:
xtn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FD63_09305
Ribosome biogenesis [BR:
xtn03009
]
Prokaryotic type
rRNA processing factors
FD63_09305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AKK67653
LinkDB
All DBs
Position
complement(2115325..2118858)
Genome browser
AA seq
1177 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTPEMYGDAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESMSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLHTPH
YEVTRLRENELGEESAKPSYQRNTPRKLPVHALTKAQLNIPAPAVTNVKHSQPAPVREVV
EAPEPVAAPVQVQAPAPAPVAAPATGVVGWLKRIFGAGESPAPAPAANEPAQRQRAHDGN
RNRNDRGDRNARRDGNRNGGQGGNAARGNGGNVRRDERRPGNGGGNPQGGQQNLAAKSPR
NEQAPQQAKPQQNPPQQPKAPKQQQPQNPPRQPRPQQDPAQAALQSDKPQRQPRQDESAV
KPVTAPAAVQDVTTIAAAAVAGGAAALSSDAPASEATSAAPAAAAAAAAAQPNLAQASVD
ERESAAETAQAVPAGENGDGDDANGEAGGRRRRGRRGGRRRRRGNGEAGSGSEGAAFDDN
DLDAGDSEGDGETAPAPSRSQPEFDFDDDAAPAEATETKPQQAPRVPREKREPRPPRTPR
HEQPDAAQTPVAAAPSVTDTGTDPAATQAAPVAAAAVAAIATAPAVAEPAPASAHVAAAP
AQAATPVVAAPLPPASDVHAAQVEAAPAAEPAQSFVVESAPSEPTPATIEAATQPAATPI
VERPAPIAATPPAAAAETAVAPAAAAEEPATPSPLVAQPRQAAAAATQPIAEEAAPAYVP
VQTTLLDALHEAPAAAAEPTPHAPVAAAATVSNDDSERSQASAAEPAPAAAAASTGLFDA
PPAAPADAPVAVAQHQPHAKSGEGESDDDKEHKERAS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggcagaagaactgcgtgtggccatcgtggac
ggccagaccctgtacgacatcgacatcgagcagccgtccaaggaacagaagaagtccaac
atctacaagggccgcatcacgcggctcgaaccctcgctcgaagccgctttcgtcgaatac
ggcggcgagcgccacggcttcctgccgctgaaggaaatctcccgcgactacttccaggcc
ggcgtcgaccacaacaaggcgacgatccgcgaactgctgcgcgagggccaggaagtggtg
gtccaggtggacaaggaagaacgcggcaacaagggcgccgcgctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccaaactcgcccagcgccggcggcgtctcgcgc
cggatcgagggcgaggaccgcgccgcgctgaaggaagcgctggacaagctgaacataccc
gacgacatgggcgtgatcatccgcactgccggcgtcggccgcgatgccgaagagctgcag
tgggacctggactacctgctgcaggtgtggaagtcgatcgccgaagccgcgctggccaag
ccggcgccgttcctgatctaccaggaatcgcggctgatcatccgcgccctgcgcgactac
ttgcgcgccgacatcggcgagatcctggtcgacacccccgagatgtacggcgatgcccag
gagttcatgcagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaggcggcctacgagcgcagc
gtgcgcctgccgtccggcggctcgatcgtggtcgaccagaccgaagcgctgaccgcggtg
gacgtcaactcctcgcgcgcgaccaagggcagcgacatcgaggacaccgcgttccagacc
aacctggaggccgccgaagaagtggcgcgccagctgcgcctgcgcgacctcggcggcctg
gtggtcatcgacttcatcgacatggcctccaacaaacaccagcgtgaggtggagaaccgc
ctgcagaacgcgctcaagtacgaccgcgcgcgggtgcagatcggccgcatctcgcgcttc
ggcctgctcgagatgagccgccagcgcctgcgtccgtcgctgggcgagtccagccagatc
gtctgcccgcgctgcgacggccacggccgcatgcgcagcgtcgaatcgatgtcgctgtcg
atcatccgcgtcgccgaagagcatgcgatgaaggagaacaccggacaggtgctggtgcag
gccccggtggagatcgccaactacctgctcaacgagaagcgccgcgcgctcagcgagatc
gagaagcgccacgacgcgccgatcgtcatcgtcgccgacgagcagctgcacacgccgcac
tacgaagtgacccgcctgcgcgagaacgagctcggcgaggaaagcgccaagcccagctac
cagcgcaacaccccgcgcaagctgccggtgcatgcgctgaccaaggcgcagttgaacatc
ccggcacccgccgtgaccaatgtgaagcactcgcagccggccccggtgcgcgaagtggtc
gaggcgcccgaaccggtcgccgcgcccgtgcaggtccaggcgccggcccccgccccggtc
gcggccccggccaccggcgtggtcggctggctgaagcggatcttcggtgccggcgaaagc
ccggccccggcgccggccgcaaacgaaccggcgcagcgccagcgcgcccacgacggcaac
cgcaaccgcaacgaccgcggcgaccgcaacgcgcggcgcgacggcaaccgcaacggcggc
cagggcggcaatgccgcacgcggcaatggcggcaacgtgcgccgcgacgagcgtcgtccg
ggcaacggcggcggcaacccgcagggaggccagcagaaccttgcagccaagtcgccgcgc
aacgaacaggcgccgcagcaagccaagccgcagcagaacccgccgcagcagccgaaggcg
ccgaagcagcagcagccgcagaacccgccgcgccaacccaggccgcagcaggacccggca
caggccgccctgcagagcgacaagccgcagcgccagccgcgtcaggacgagagtgcggtc
aagccggtcaccgcacctgccgctgtgcaggacgtcaccacgatcgcggccgctgccgtg
gccggtggtgcagccgcgctgagcagcgatgcaccggccagcgaggccaccagcgccgcg
ccggcagcggcagcggcagcggcagcagcgcagccgaacctggcgcaggcgagcgtcgat
gagcgcgagagcgcagcggaaaccgcgcaggccgtccccgctggcgagaacggcgatggc
gacgacgccaatggcgaggccggtggccgccgccgtcgcggtcgtcgtggcggccgtcgc
cgtcgtcgcggcaatggcgaagccggcagcggcagcgagggtgcagcgttcgacgacaac
gacctggatgcaggcgatagcgaaggcgacggcgaaaccgcaccagcgccgagccgcagc
cagccggagttcgatttcgacgacgatgcggcccccgccgaagccaccgaaaccaagccg
cagcaagcgccgcgtgtcccgcgagagaagcgcgagccgcggccgccacgtacgccgcgt
catgagcagcctgatgccgcgcagacgcctgtcgctgctgcgccgtcagtcaccgacacg
ggaaccgaccctgccgcaacccaggctgcgccggttgctgcagccgctgtggctgcgatc
gcaacggctcctgccgttgccgagccggcaccggcatcggcacacgtcgcggcagcgcct
gcgcaagcagcgacgccggtagtggcagcgcccttgccgccggccagcgatgtacatgcc
gcacaggtcgaggcagcgcctgcagcggaacctgcccagtcgttcgtcgtcgagtcggca
ccgtccgagccaacgccggcgacaatcgaggccgcgacgcaaccggccgcgacgccgatc
gtcgaacggcctgcgccgatcgccgcaacgccgccagcggcggcagcggaaacggcagtg
gcaccggccgcagcagccgaagaacctgcaacgccgtcgccgctggttgcccagccgcgg
caagcagccgctgcggcaacgcaaccgatcgcagaggaagcagcgccggcctacgtgccg
gtgcagaccacgctgctggacgcattgcacgaggcgccggccgccgcggccgaaccgacg
ccgcacgcaccggtcgccgctgccgccactgtgtcgaacgacgacagcgagcgcagccaa
gccagcgctgccgaaccggcacctgccgctgccgcggccagcaccggcctgttcgatgcg
ccgcctgcagctccggcggatgcgccggtcgctgtcgcccagcaccagccgcacgccaag
tccggcgaaggcgagagcgacgacgacaaggagcacaaggaacgcgccagctga
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