Xanthomonas translucens pv. undulosa: FD63_12105
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Entry
FD63_12105 CDS
T03961
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xtn
Xanthomonas translucens pv. undulosa
Pathway
xtn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FD63_12105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtn03019
]
FD63_12105
03016 Transfer RNA biogenesis [BR:
xtn03016
]
FD63_12105
Enzymes [BR:
xtn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FD63_12105
Messenger RNA biogenesis [BR:
xtn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FD63_12105
Transfer RNA biogenesis [BR:
xtn03016
]
Prokaryotic type
tRNA degradation factors
FD63_12105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_IclR
OB_Dis3
RNase_II_C_S1
HTH_20
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
AKK68165
LinkDB
All DBs
Position
complement(2788778..2791132)
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AA seq
784 aa
AA seq
DB search
MPSWMPSLPSFLRRSPKPPLQPLPPPEPVAAASSRKKPAAAVADPFAAREAERYAEPIAS
REAILQLLDRCDGPQTLEELAAQLGLTEPSRREALSKRLGAMLREAQLVQNRRGGYAPVQ
QTNLIPGVVIANPDGFGFLRPDEGGDDLFLPPYEMRKVLHGDRALANVTGIDRRGRREGS
IARVLERGLSRLIGRFSMEGGIAYVVPDDKRIQRNIQIPTDAIGEARDGQLVVCELTSTP
DGRRPPIGKIIAVLGDKLTPSLVVETAIHGRELPYEFPQAVLDEAAAVPLTVEPAAIKGR
VDLRQTPLVTIDGADAKDFDDAVFCEPNADGFRLVVAIADVSHYVRPGTPLDVEAIRRAT
SVYFPGFVVPMLPETLSNGICSLNPKVDRMCFVCDMQIDRQGEVAGARFYEAVMNSHARL
TYDQVWQAVGEKDEQVRKDVAAVLPQIERLYQLFQVLAKARSRRGAIEFETSEVRFVLDN
TGEVTQAGMLVRNDAHKLIEECMIAANVAAARHLLEARIPAPYRVHERPPESKYADLLEF
LKEFKLSLPPWSKVVPGDYTKLLKKVRERPDAALLESVLLRSQSMAVYSPDNAGHFGLAL
EAYAHFTSPIRRYPDLLVHRAIKYALTRGAPDKYLYSPREMAALALQCSERERRADEAER
EVDERYRAAWMEKHVGGQFDGVVSGVTSFGLFVELDQSKVNGLIHVTQLPQDYYQFDAVR
KTLSGERRGMQFRLGDRVRILVLKASMEERKIDFRLVVEGEPMTDMPPPPERGQQPAKRK
KKKY
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgtggatgcccagcctccccagtttcctgcggcgcagccccaagccgccgttg
cagccgctgcctccgcctgagccggtggccgccgcgtcctcgcgcaagaagccggccgcc
gcggtggccgatccgttcgccgcccgcgaggccgagcgctatgccgagccgatcgccagc
cgcgaagcgatcctgcagctgctggaccgctgcgacggcccgcagacgctggaagagctg
gccgcgcaactcggcctgaccgagccttcgcgcagggaggcgttgagcaagcgcctgggc
gcgatgctgcgcgaggcgcaactggtgcagaaccgccgcggcggctacgcgccggtgcag
cagaccaacctgatccccggcgtggtgatcgccaatcccgacggcttcggcttcctgcgt
ccggacgaaggcggcgacgacctgttcctgccgccctacgaaatgcgcaaggtgctgcat
ggcgaccgcgcgctggccaacgtcaccggcatcgaccgccgcggccgccgcgaaggcagc
atcgcgcgcgtgctcgagcgcggcctgagccggctgatcggccgtttcagtatggaaggc
ggcatcgcctacgtggtgccggacgacaagcgcatccagcgcaacatccagatcccgacc
gatgcgatcggcgaggcgcgcgacggccagctggtggtgtgcgaactcacctccaccccg
gacgggcggcgcccgccgatcggcaagatcatcgcggtgctcggcgacaagctgaccccg
tcgctggtggtggaaaccgccatccacggccgcgagctgccctacgaattcccgcaggcg
gtgctcgacgaagccgcggcggtgccgctgacggtggagccggccgcgatcaagggccgc
gtggacctgcggcagacgccgctggtgaccatcgacggcgccgacgccaaggacttcgac
gacgcggtgttctgcgaaccgaacgcggatggcttccgcctggtggtcgccatcgccgac
gtgtcgcattacgtgcgcccgggcaccccgctggacgttgaagcgatccgccgcgcgacc
tcggtctacttccccggcttcgtggtgccgatgctgccggagacgctgtccaacggcatc
tgctcgctcaatcccaaggtcgaccgcatgtgcttcgtctgcgacatgcagatcgatcgc
cagggcgaggtggccggcgcgcgcttctacgaggcggtgatgaattcgcacgcgcggctc
acctacgaccaggtgtggcaggcggtgggcgagaaagacgagcaggtgcgcaaggacgtg
gccgcggtgctgccgcagatcgagcgcctgtaccagctgttccaggtgctggccaaggcg
cgctcgcgccgcggcgcgatcgagttcgagacctcggaagtgcgtttcgtgctcgacaac
accggcgaggtgacccaggccggcatgctggtgcgcaacgacgcgcacaagctgatcgag
gaatgcatgatcgccgccaacgtggccgcggcgcgccacctgctggaggcgcgcattccg
gcaccgtaccgcgtgcacgagcggccgccggagtccaagtacgccgacctgctggagttc
ctgaaggaattcaagttgagcctgccgccgtggagcaaggtggtgccgggcgactacacc
aagctgctgaagaaggtgcgcgagcgcccggacgcggcgttgctggagtcggtgctgctg
cgcagccagagcatggcggtgtattcgcctgacaacgccggccacttcggcctggcgctg
gaggcgtatgcgcacttcacctccccgatccgccgctatcctgacctgctggtgcaccgc
gcgatcaagtacgcgctgacccgcggcgcgccggacaaatacctatattcgccgcgcgag
atggcggcgctggcgctgcagtgctccgagcgcgaacgccgtgccgacgaggccgagcgc
gaggtcgacgagcgctaccgcgcggcgtggatggaaaagcacgtcggcggccagttcgac
ggcgtggtcagcggcgtcaccagcttcggcctgttcgtggagttggaccagtccaaggtc
aacggcctgatccacgtgacccagctgccgcaggactattaccagttcgacgcggtgcgc
aagaccctgtccggcgagcgccgcggcatgcagttccggcttggcgaccgggtccgcatc
ctggtgctgaaggcaagcatggaggagcgcaagatcgacttccgcctggtggtggaaggc
gagccgatgaccgatatgccgccgccgccggaacgtgggcagcagccggccaagcgcaag
aaaaagaagtactga
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