Xenopus tropicalis (tropical clawed frog): 100036631
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Entry
100036631 CDS
T01011
Symbol
lamc1
Name
(RefSeq) laminin subunit gamma-1 precursor
KO
K05635
laminin, gamma 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100036631 (lamc1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100036631 (lamc1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
Laminin_B
MCPsignal
Motif
Other DBs
NCBI-GeneID:
100036631
NCBI-ProteinID:
NP_001090659
Xenbase:
XB-GENE-478553
UniProt:
A0JP86
LinkDB
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Position
4:complement(100038678..100112857)
Genome browser
AA seq
1592 aa
AA seq
DB search
MRAPVLAVLAVLLLGTVRAAMDECYEEGSPQRCMPEFVNAAFNATVVATNTCGTPPEEYC
VQTGVTGVTKSCHICDSGQFHLQHGAEYLTDYNNQAEITWWQSQTMLAGIQYPSTINLTL
HLGKAFDITYVRLKFHTSRPESFALYKRTHEDGPWIPYQYYSGSCEKTYQKFNRGFIRTG
EDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLN
TFGDEVFSDPKVLKSYYYAISDFAVGGRCKCNGHASECVRNEFEKIVCNCKHNTFGSDCE
KCLPFYNDRPWRRSTADSPNECLPCNCNGRSQECYFDPELYRSTGHGGHCTGCADNTDGP
NCERCRENYYRQDNNEPCHACQCNPVGSLSTQCDNYGRCSCKPGVMGEKCDRCQPGFHSL
TEAGCRPCACNPAGSTDECNVETGRCSCKDNVEGFNCERCKPGFFHLDEANPRGCTPCFC
YGHSSVCSSAEGYRVSSIVSTFESGVEGWTAQQRDGSEYSLSWVSDSSAVSVISESYFPI
YFIAPAKFLGNQGASYGQNLTFSFRVERRDTRLSAEDLVLEGAGLRVSVPLIAQGNSYPS
ETTQRYIFRMHEATDYPWRPSVSPFEFQKMLQNLTAIKIRGSYSERSAGFLEEVSLVTAV
AGAGPSAPWVEICSCPTGYIGQFCERCAPGYRRENPSQGPYSPCVLCTCNGHSDTCDPES
GVCDCQHNTAGPHCERCSEGYYGDSTTGSASDCQPCPCPGGSSCAVVPRTKEVVCTNCPL
GTTGKRCELCDDGYFGDPLGENGAPRPCRICECSNNIDPNAVGNCDRLTGECLKCIYNTG
GFYCDRCRDGFYGNPLAQNPDLKCRACSCNPYGTVKGQSGCNQVTGQCECLPHVTERDCS
ACEPGFYNLLSGRGCERCDCHSLGSTSGQCDVRTGQCECHPGISGQQCQQCEPNHFGFGP
EGCKPCDCDPEGSGSLQCKEDGRCECKSGFVGTRCDQCEENYFYNRSGPGCQECPACYRL
VKDKVNEQRGKLQELEDLLKNLSTGEENITDQAFEERLREAEKAVNDLLLDAQSSKDVDQ
GMLDRLAEINTTLSFQLERLQNIRDMIRDTDKQAQEARDRVENTEFIIDSARVQLEKAKM
AIANVSITPPESTGDPNNMTLLAEEARKLAERHMQEARDIEKAAKEANDTANEALRLLQK
TLASENQTALDIEELNRKYAQAKDIARELEKQASKVHAEAEEAGNRALQIYANLTSVPSI
DTTALQNEADKIQKEAEELDSLIDRKLRDYEDLREDMRGREMEVKNLLDKGKTEQQTADQ
LLARADAAKAQAEEAAKKGRETLQEANDILNKLRDFDKRVNDNKTAAEAALRKIPMIAQT
IAEANNKTRQAESALGNANADARGAKSKAEEAEALANTVQKKAATARAEADNTFKEVTDL
DGELQDMLQQLQEAENQLKKKQAEAESDEKMAEMASNATKDAESNANNSKKSVNGVLATI
DELLSRLGQLDSVDVGQLTVLEKTLDDAKNQLRDSDLDRKLAELQESSNLQRVALDSYSR
DIDQILRDIANLEDIKNTLPAGCYNTPIIEKP
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atgcgggccccggtgctagcggtgttggccgtgctgctactcgggacagtgcgggccgca
atggatgaatgctatgaggaggggagtccccagcgctgcatgcctgagtttgtcaatgcc
gcatttaacgcgactgttgtggccacaaacacatgtggcactcccccggaggagtactgc
gtacagaccggagtcaccggggtaaccaagtcctgccacatctgcgacagcggccagttt
cacctgcaacacggcgccgagtaccttactgactacaacaaccaagcagagattacctgg
tggcagagccagaccatgctggccgggatccagtaccccagcaccatcaacctgaccctg
cacctcggaaaggcctttgacatcacatatgtacgcttgaagttccacacgagtcggcct
gaaagctttgcactgtacaagcgaacacacgaggatggcccatggattccataccagtac
tacagtggctcatgcgagaaaacctaccaaaagttcaatagaggcttcatccgcactggg
gaggatgaacaacaagctctttgtactgatgaatttagcgacatctcgccattaacaggg
ggcaatgtagccttttctaccctcgaaggtcgacccagtgcatacaactttgacaacagt
cctgtattacaggagtgggtgactgctacagatatccgagtgaccctgaatagattaaac
acatttggagatgaagtttttagcgaccccaaagtgctcaagtcttattattatgctatt
tctgactttgctgtcgggggcaggtgcaaatgtaatggccacgccagcgagtgtgtgcgt
aatgagtttgagaagattgtgtgcaactgtaaacacaacacttttggcagtgactgtgag
aaatgcttacccttttataatgaccggccctggaggagatcgactgctgacagtcccaac
gagtgtctaccatgtaattgtaatggacgctcccaggagtgctatttcgatccagaactg
taccgatctacaggacatggtggacattgcactggctgtgcggacaacactgatggccca
aattgtgagagatgccgtgagaactattatcgtcaggacaacaatgagccctgccatgcc
tgccaatgcaacccagttggctctcttagcacccagtgtgacaactatggacgctgcagc
tgcaaacctggtgtgatgggggagaaatgtgatagatgccagcctggctttcactctctt
actgaagctggctgcaggccctgtgcttgtaatcctgccggcagcacagacgagtgcaat
gtagagacgggccgctgtagctgtaaggataatgtggaaggattcaactgtgagaggtgt
aaacctggattcttccacctggatgaggctaacccacgtggctgcactccgtgcttctgc
tatggtcattcctcagtgtgtagcagtgcagagggataccgtgtcagcagcattgtctcc
acatttgagagtggtgtggagggctggacagcacagcagagggatggatctgaatactcg
ctctcctgggtctctgacagcagtgcagtttctgttatttctgagagctactttcccatt
tacttcattgcaccagcaaaatttttgggaaaccaaggtgcaagttatggccagaacctc
acgtttagcttccgggtggagcgccgtgatactcgactttctgcagaggatcttgtgctc
gaaggagctggactcagggtatctgtgcctctcattgcccaagggaactcctacccaagt
gaaactactcaacgctatattttcaggatgcatgaagccactgactatccttggagacca
tcagtatcaccttttgaatttcagaagatgttgcagaatcttacagcaattaagatccga
ggaagctacagcgaacgcagtgctggatttctagaggaggtcagcctggtcactgctgtt
gcaggtgctggtccttctgccccatgggtggagatatgcagctgtcccactggttatatt
ggtcagttctgtgagaggtgcgctcctggctatcgaagagagaacccaagccagggacct
tacagtccttgtgtgctgtgtacttgcaatggtcatagtgacacatgtgaccctgagtct
ggtgtctgtgactgccaacataataccgcaggtcctcactgtgagaggtgcagtgaaggt
tattatggagatagtacaactggtagcgcttcagactgtcagccctgtccatgcccagga
gggtcaagctgtgctgttgtaccaaggacaaaggaggttgtttgtaccaactgccccctg
gggactacaggaaagcgctgtgagctgtgtgatgatggctactttggagacccactgggt
gaaaatggagccccccgaccatgtcgaatttgtgagtgcagcaacaacattgaccccaat
gccgttggtaactgtgaccgtctgactggagagtgcctgaaatgtatctacaacacgggt
ggattttactgtgaccgatgccgagatggcttctatgggaatcctcttgcacaaaaccct
gaccttaaatgcagagcttgcagttgtaacccatatggtactgtcaagggacaaagtggc
tgcaaccaggtgactggtcagtgtgagtgcctgcctcatgtcacagaacgggattgttca
gcttgtgagccaggattctacaacctcttgagtggtcgtggctgtgaaagatgtgattgc
cactccctaggctccaccagtggtcagtgtgatgtccgtacaggacagtgtgaatgccat
cctggcatcagtggccaacaatgccagcagtgtgagccaaaccactttggattcggccca
gaaggctgcaaaccctgtgactgtgatcctgaaggatccggttctctccagtgtaaagag
gatgggcgctgtgagtgtaagagtggatttgtcggcactcgctgtgatcagtgtgaggaa
aattatttctataaccgttctggcccagggtgccaggaatgtccagcttgctaccgattg
gttaaagataaggtgaatgagcagcgagggaagttgcaggaactagaggatctcctaaag
aacttgagtacaggagaagaaaacattacagaccaggcctttgaggaaaggctcagggag
gctgagaaagctgtgaatgaccttctcctggatgcccagagcagcaaagatgtagatcag
ggcatgctggatcggcttgcagagataaacactacactgagcttccagttagaacgtctg
cagaacataagggacatgatccgtgacacagacaagcaggcacaggaggccagagatcga
gtagagaacacagaatttatcattgattctgccagagtacaactggaaaaagccaagatg
gccattgccaatgtgtcaattaccccaccagagtcaactggggatccaaacaatatgacg
ctgcttgcagaagaagcaaggaagctagctgaaagacacatgcaggaagctcgggacatt
gagaaggctgctaaggaggctaatgacactgcaaatgaagcacttcgcttgttacaaaaa
actcttgcttcagagaatcaaacagccttagatattgaagaactaaatcgcaaatacgca
caggctaaggacatagcccgggagctggaaaagcaggctagcaaggtgcatgcagaggct
gaggaggctggaaacagagcactgcagatttatgccaacttgacatcagttcccagtatt
gatactacagcattacagaatgaagcagacaagatccagaaagaggcagaagagctggat
tctttgattgaccgaaagctgcgagactatgaagatctgagagaggacatgaggggtcgg
gaaatggaagtcaaaaatctgctagataaaggaaagactgagcagcagaccgctgaccag
ctacttgcccgagctgacgccgcaaaagcacaagcagaggaggcagcaaagaagggacgt
gaaacacttcaagaagctaatgatatactaaacaagctgagggattttgacaagcgagtg
aatgacaataagacagcagcagaagctgctttacgcaagatcccaatgatcgcccaaacc
attgccgaagccaataacaagacacgacaggcagagagtgcacttggcaatgctaatgct
gacgcacggggggcaaaaagcaaggcagaggaggcagaagctctagccaatactgtacaa
aagaaagcagccacggccagagcagaggctgataacaccttcaaagaagtgacagatttg
gacggggagctccaagatatgctgcaacagctgcaagaagcagagaatcagctaaagaag
aagcaagctgaagcggagagtgatgagaagatggctgaaatggcctctaatgcaacaaaa
gatgctgaatcaaatgccaacaattccaagaagtctgttaatggggttcttgcaacgatc
gatgagttgctctcccgcctcgggcagctagattctgtggatgttggacaactcactgta
ctggagaagacactggacgatgcaaagaaccaactgcgtgacagcgatctggacagaaag
ctagcagaacttcaggagtcttccaacttacagagagttgcactagattcatatagtcga
gacattgaccagatcctgcgagatatagctaatcttgaggacataaagaacaccttgcct
gccggctgctataacacccctattatcgaaaagccttaa
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integrated database retrieval system
