Xenopus tropicalis (tropical clawed frog): 100036667
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Entry
100036667 CDS
T01011
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100036667 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
100036667 (herc4)
Enzymes [BR:
xtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
100036667 (herc4)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
HECT type E3
100036667 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
100036667
NCBI-ProteinID:
NP_001122122
Xenbase:
XB-GENE-962981
UniProt:
B3DLM9
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Position
7:38563530..38602032
Genome browser
AA seq
1049 aa
AA seq
DB search
MLCWGNTSFGQLGLGGIDEEVVLEPRRCDFFINKNVRDVGCGSRHTVFVLDDGTVYTCGC
NDLGQLGHDKSRRKPEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAVYGQIGLST
AEEYIRVPRNIKSLSDVQIVQVACGHHHSLALSKDSDIFSWGQNQYGQLGLGLEIKKECA
PRHIKSLSGIPFAHIAAGGGHSFALTISGAIFGWGRNKFGQLGLTDETDRNVPALLKSLR
SQKIIHICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEVNPRKVFELMGSIVTQIA
CGRQHTLAFVPSSGRIYSFGLGGNGQLGTGSTINRKSPFTVKGNWLTYEDYVRHLPEANG
CYCLKRIYSGGDQSFAHYITIQNCHPPDDFRRCNCSRKIRTLDEGVIQRWLNYSLGRLPL
EIVNEIDKVFSSAACLNGSFLVTSNNDHYMTSSKFSGVDMNVARLLLHKLMDPSQPQIAQ
QVAASLEKNLIPRLTSSPPDIECLRLYLILPECPPMADANNLTSLAIPFGTAIVNLEKAP
LKVLENWWSLLEPPLFLKVVQLYKDVVVHLLKLSKNGIPLTERRLFYRFLNTALRVLEIL
HRVNEKAAQIIPYDKFYIHEVQDFVDIQNDYINWIKQQASGMVADPPVTICTYPFVFDAQ
AKTTLLQTDAVIQMQMAVDNAHRQNNLSWLFPATESVDPCLILVVRRDNIVGDAMEVLRK
TKNIDYKKPMRVIFFGEEAIDAGGVRKEFFLLIMRELLDPKYGMFRYYEESRLIWFSDKT
FEDSDLFHLIGVVCGLAIYNFTIIELHFPLALYKKLLKKKPSLEDLKELMPIIGRSMQQL
LDYTEDDIEETFCLNFTITVENFGTTEVRELIPNGAEIPVNRKNRQDFVDAYVDYIFNQS
VASLFSAFSAGFHKVCGSKVLELFQPNELQAMVIGNTAYDWKELEKSTEYKGEYWADHPT
IKMFWEIFHALPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQPTGGGEQFLPVAHTCFNL
LDLPKYSKKETLRSKLIQAIDHYEGFSLV
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgttatgctggggaaatacatcttttggacagctgggattaggggggattgatgaggag
gttgttttagaaccgagaagatgtgactttttcatcaataaaaatgtccgtgacgtcgga
tgtggaagcagacacacagtttttgtcttggatgatgggacagtttacacctgcggatgt
aatgatcttgggcaactgggacatgacaaaagcagaagaaagccagagcaggttggagcc
ctggatgctcagatcattgtggcagtttcatgtggagaagctcacaccttggcattaaat
gacaaaggtcaagtgttttcttggggtcatgctgtatatggacagataggtctctcaact
gcagaagaatatattagagtacccagaaatataaagagtctgtctgatgtacagattgtg
caagttgcctgtggtcatcatcattcacttgcactgtccaaagacagtgatattttttca
tggggacaaaaccaatatggccagcttggcttgggtttagaaataaagaaagaatgtgca
cccagacatattaagtctctatcagggattcccttcgctcatattgctgctggaggtgga
cacagttttgcgttgacaatctcaggggccattttcggttggggaagaaacaaatttggc
cagcttggtcttactgatgaaactgatcgaaatgtcccagctcttctcaagtcacttcgc
tcacagaaaatcattcatatttgttgtggagaagatcatacagctgctttaaccaaagag
ggtggtgtatttacatttggagctgggggctatggacagcttggtcataactctaccaac
catgaagtcaacccaaggaaagtgtttgagcttatgggaagcattgtgacacaaatcgct
tgtgggaggcagcacacattagcttttgttccttcatcaggacgcatttattcgtttggg
cttggtggcaatgggcagttaggaacagggtctaccattaacagaaaaagtcctttcaca
gttaaagggaactggctgacttatgaagactatgttcggcaccttcctgaggctaatgga
tgttactgtttgaagagaatttacagcggtggagaccagagttttgcacattatattaca
atacagaattgccatcctccagatgactttaggaggtgtaattgttccagaaaaatacgg
actttagacgagggagttatacaacgatggctgaattactccttgggaagacttccatta
gaaatagtaaatgaaatagacaaagtattttcatcagctgcatgtttaaatggaagcttt
ttagtgacaagcaacaacgatcactatatgacaagttccaagttctcaggagtagacatg
aatgttgctagacttcttcttcacaagcttatggatccatcacagccacaaatagcccaa
caggtggctgccagcttggagaagaatcttattcccagactcacaagttctccccccgac
attgagtgcttgcgtttgtatctcatcctcccagagtgtccccccatggctgatgccaac
aacttaacttctttagcaattccgtttggcacagctattgtaaacttggaaaaagcacca
ttaaaagttttagaaaactggtggtccctacttgagcctccgcttttcttgaaagtagta
caactttataaggatgttgtggtgcacctattgaaactctccaaaaatggaattcctctt
acggagcgaagattattctacagatttcttaatactgccctcagggttttagagatcctg
cacagggtaaatgaaaaagctgcacagatcataccctatgataaattctacattcatgaa
gtgcaagattttgtagatatccaaaacgactacattaactggattaagcaacaagcatct
ggaatggtagctgatccaccagttacaatctgcacatacccctttgtttttgatgctcag
gcaaagacaacacttctgcagacagatgcagtcattcagatgcagatggcagttgacaat
gctcataggcaaaacaacttatcctggttatttcctgcaactgaatcagtggatccttgt
ctgatattagttgttcgcagagataatattgttggtgatgctatggaagtcctaaggaaa
accaaaaatatagactacaaaaagccaatgcgggtaatcttttttggagaagaagcaatt
gatgcaggtggcgttcgtaaggagtttttcctactcatcatgagagaattactggacccc
aagtatggaatgttcagatattacgaagaatccagattaatctggttttctgataagacc
tttgaagacagtgatttattccaccttattggtgtagtctgtggtttagcaatatacaat
ttcacgattattgagcttcacttccctttggctttatataagaagcttttaaaaaagaaa
ccatccttggaagacttaaaggagctgatgcctattatcggacggagcatgcagcagttg
ttggactatactgaagatgacattgaagagacattctgcctcaattttacgatcacagta
gaaaacttcggaacaacagaagtcagagagctaatcccaaatggagctgagataccagtg
aataggaaaaacaggcaggacttcgtagatgcctatgtagactacatcttcaatcagtct
gtggcttccttattcagtgcgtttagtgcaggatttcacaaagtgtgtggtagcaaggta
ctcgagctcttccagcccaatgaactgcaggccatggtgattggcaataccgcctatgac
tggaaggaactcgaaaaaagcacagaatacaaaggagagtattgggccgaccaccctaca
attaagatgttctgggaaatttttcatgcattacccttggaaaagaaaaaacaattcttg
ctattccttactggcagcgatcggattcctattctcggtatgaaaagtttaaagcttgtc
attcagccaacaggaggaggagaacagttcctaccagtcgctcacacctgcttcaacctc
ttggatctccccaaatacagcaagaaagaaactctgcgatccaaactgattcaagctata
gatcactatgaaggctttagcctcgtctga
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