KEGG   Xenopus tropicalis (tropical clawed frog): 100036723
Entry
100036723         CDS       T01011                                 
Symbol
wdr7
Name
(RefSeq) WD repeat-containing protein 7
  KO
K24738  rabconnectin-3b
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04142  Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    100036723 (wdr7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xtr04131]
    100036723 (wdr7)
Membrane trafficking [BR:xtr04131]
 Endosome - Lysosome transport
  Acidification regulators
   Rabconnectin-3 complex
    100036723 (wdr7)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st WD40 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd WD40_Gbeta WDR55 CFAP251_N ASA1 Beta-prop_EML EIF3I ANAPC4_WD40 Beta-prop_Aladin DSE1_N WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_VPS8 Beta-prop_NOL10_N Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_ACSF4 WDR90_beta-prop_4th PAC11 Beta-prop_WDR19_1st WDR72_alpha-sol Beta-prop_SCAP Beta-prop_Vps41 Tricorn_2nd Beta-prop_pof12 DUF1746 AMN1_helical Arminin PD40
Other DBs
NCBI-GeneID: 100036723
NCBI-ProteinID: NP_001090737
Xenbase: XB-GENE-951997
UniProt: A0ACM8QBJ5 F6RTW6
LinkDB
Position
1:complement(202369239..202597747)
AA seq 1486 aa
MAGNSLVLPIVLWGRKAPTHCISTVLVMDDLETIVTGCHDGQICLWDLSPELEINPRALL
FGHTASITCLSKASASSDRQYIVSASESGEMCLWDVNDGRCVEFTKLACTHTGIQFYQFS
IGTPREGRLLCHGHYPEVLVMDASSLDVLYSLVSKISPDWISSMSIIRSHRTQEDTVVAV
SVTGILKVWIITAEVHRMQDTEPVFEEESKPIYCQNCQSISFCAFTQRSLLVVCSKYWRV
FDAGDYSLLCSVPSEEGQTWTGGDFISADKVIVWTEDGQSFIYKLPASCIPASDTFRIDV
GKAIENSIPPLLYSVMPKEDTQLLICPPVTRFFYGRRKSFHKLLIQGDSSGRLCIWSVPE
VLEQPENKQGLGVTTTTSLQEAFDKLQPLPAGIIDQLSIMPNSKEPLKVTASVYIPSHGR
LVCGREDGSIVIVPATQTAIVQLLQGEHMLRRGWPPHRTLRGHRNKVTCLLYPHQVSSRY
DQRYLISGGVDFSVIVWDIFSGEMKHIFCVHGGEITQLLVPPDNCSTRVQHCICSVGSDH
SVGILSLRERKCIMLASRHLFPIQVIKWRPSDDYLVVGCSDGSVYVWQMDTGALDRCVMG
ITAVEILNACDEAVPAAVDSLSHPAVNLKQAMTRRSLAALKTVAHHKLQTLATNLLASEA
SDKGNLPKYSHNSLTVQAIKTNVTDSDIHLLFFDVEALIIQLLTEEASRPNTALTSPESL
QKASGSSDKGGSFLAGKRAAVLFQQVKETIKENIKEHLLDDEDEDEEAMRQKRDESDPEY
RTSKSKPLTLLEYNLTMDTAKLFMSCLHAWGLNSALDDVCLERLGMLKPHCPVSFGLLSR
GGHMSLMLPRFNQPVYKALDGNVGVGRKMSVSEGLGKGTYGVSRAVTTQHLMSIISLANT
LMSMTNATFIGDHMKKAPNRPPRSGSPDSMKGKASAQASSSMIQSQIKQAVAPDASASTE
ADHSASDRTLHSCFSVNEGWSQLAAMHCVMLPDLLGLDKFRPPLLEMLARRWQDRCLEVR
EAAQALLLAELRRIGQEGRKETIDSWAPYLPLYVDTIMSPGVTAENIQAGNASPDSAGSE
AKVQEEEQDLVDDDITAGCLSNVPPLKKASPSYEERRKQATAIVLLAVIGAEFGAEIEPP
KLLTRPRSSSQIPEGFGLTSGGSNYSLARHTCKALTFLLLQPPSPKLPPHSTIRRTAIDL
IGRGFTVWEPYMDVSAVLMGLLELCADAEKQLANITIGLPLSPAADSARSARHALSLIAT
ARPPAFITTIAKEVHRHTALAANTQSQQNIHTTALARAKGEILRVVEILIEKMPSDVVDL
LVEVMDIIMYCLEGSLLKKKGLQECFPSICKFYMVSYCERSHRIAVGARIGTVALYDIRT
GKCQNIHGHKGPITSVSFAPDGRYLATYSNKDSHISFWQMNTSLLGSIGMLNSAPQLRCI
KTYQVPPVQPASPGSLNALKLARLIWTSNRNVILMAHDGKEHRFMV
NT seq 4461 nt   +upstreamnt  +downstreamnt
atggcagggaacagtctcgtccttcccatagtgctttggggccgtaaggcccccactcac
tgcatttccacagtgctagtgatggatgatttagaaaccattgtaactggctgccacgat
ggacaaatctgcctttgggatctttcacctgagctggagatcaatccacgggccttgctc
tttggtcacacagcttctattacctgcttatcgaaagcttcagcatccagtgaccggcag
tatattgtgagtgcatcagaaagtggggagatgtgcctgtgggacgtgaacgacggaaga
tgtgtggagtttaccaaattagcatgcacacacaccgggatacagttctatcagttctcg
attgggaccccgcgggaaggaaggctgctgtgccacggccattacccggaagttcttgtc
atggatgccagtagcctggatgtgctttactccttggtatccaagatttctccagactgg
atcagttctatgagcataatccgctctcacagaacccaagaagatacggttgtagctgta
tcagtgaccgggatcctcaaggtgtggatcattactgccgaagttcatcgaatgcaggac
acagaaccagtgttcgaagaagaatccaaaccaatttactgccagaactgccaaagcatt
tctttctgcgcatttacccagcgctctctcttggttgtgtgttctaagtattggagggtg
tttgatgccggagactattccttattatgttccgtcccaagtgaggaaggccagacatgg
accggaggggattttatatcagcggataaagtcatcgtttggacagaagatggtcaaagt
tttatttataaacttccagccagttgcattccagccagtgacaccttccgcattgatgtt
ggaaaggcaatagaaaattctatcccaccattgctttacagcgttatgccaaaggaagac
acacagcttcttatctgccccccagtcacaaggtttttctacggacgcaggaaatctttc
cataaacttctaatccaaggagattcttctggaaggctgtgtatctggagcgttccggag
gtgctggaacagccggagaacaagcaaggactcggagtaactaccaccacctctttgcag
gaggcatttgacaaactgcagccgcttcccgctgggattatagatcaactcagtattatg
ccaaacagcaaggagccacttaaagtgacagcgagcgtctacatcccatcccacggtcgc
ttggtgtgtgggcgggaagatggcagtatagttattgttccggccacacagacggctata
gttcagctgctgcagggggaacacatgttaaggagaggttggcctccccacagaacgctg
cgtgggcatcggaacaaagtgacttgcttgttgtaccctcaccaagtgtcttcacgctac
gatcagcgctaccttatatcggggggtgttgatttctctgtcatcgtttgggacattttc
tctggcgagatgaaacacatattttgtgtacacgggggtgaaatcacgcagcttcttgtt
ccaccagacaactgtagtacgagagtgcagcattgtatctgctcagtgggcagtgatcat
tccgttggcatcttgagcttgagagagagaaagtgcatcatgctggcatcccgccacctc
tttcccattcaagtaataaagtggagaccatcggacgattacctagtggttgggtgttca
gacggctccgtctacgtctggcagatggatacaggtgccttagaccgttgtgttatggga
atcacggccgtagagatcctgaatgcttgtgatgaagccgtaccggccgctgtggattca
cttagccacccggctgtcaacctgaaacaggccatgaccagaaggagtcttgctgcactc
aaaactgtagcacatcataagctgcagaccctcgcgaccaatctgttggcttccgaagcc
tccgacaaagggaatttgcctaaatattcacataactccctgacggttcaagcaataaag
acaaatgtaacggactcggacatacacctgctcttctttgatgtagaggccctaattatt
cagctccttactgaagaagcctccaggccaaatactgcactgacgtcccccgagagttta
cagaaagcatctggcagttctgacaaaggagggtctttcttggctggtaaacgagcagca
gtgcttttccaacaggtgaaggagactatcaaagaaaacattaaagaacatctcctcgac
gatgaagatgaagacgaagaagcgatgagacagaagcgggacgaaagcgaccccgagtac
cgcactagcaaatccaaaccattgactctgcttgagtacaaccttactatggacaccgca
aaacttttcatgtcatgtctccatgcctggggcttgaactctgcattggatgacgtttgc
cttgagcgcctcggaatgctgaaaccacactgccctgtgtcttttggtttgctctcaaga
ggtggccacatgtccttgatgcttccacggttcaaccagccagtttataaagcgttagat
ggaaatgtaggtgtaggacgtaaaatgtctgttagcgaaggactcgggaaaggaacgtat
ggagtttcacgggcggtcactacacagcatttgatgtctattatatccctggcaaataca
ctcatgagcatgaccaatgctacattcattggtgaccatatgaagaaggctccaaacagg
cctccgagatccggatcgccagactctatgaagggcaaggcttccgcccaggcctccagc
agcatgatacaaagtcagatcaaacaagctgttgctcctgacgcttctgctagcactgaa
gccgatcattctgcctctgatcgcactttacattcctgtttctcagtcaatgaagggtgg
agtcagttggccgccatgcattgcgtcatgctccctgacttgctgggattggacaagttc
aggcctccgctcctggaaatgctggcgcgtaggtggcaggaccggtgcctggaggtcaga
gaagcggcacaagcattgttactcgctgagctccggcgaatcggacaagaaggacgcaag
gagacaatcgattcctgggcaccatatttacccctatacgttgataccattatgtcaccc
ggggtaacggcagaaaatatccaggctggcaatgcgagtcccgactcggccggctcagag
gctaaagtgcaagaggaggagcaggatctggtggatgatgacatcactgccggctgtctc
tccaacgtcccccctctgaagaaagcgtccccttcttatgaagagaggagaaagcaggcc
acagccattgtgcttctggcggtcattggcgctgagttcggagccgagatagagcctcca
aaattgctcacacgtccacgcagctccagtcagattcccgagggatttgggctgaccagc
ggggggtccaactattctcttgctcggcatacatgcaaggctctgacattcctgctgctg
cagccgcccagccccaagttacccccccacagcaccatccgcaggactgccatcgatttg
atcggacgaggttttacagtgtgggagccttacatggatgtgtccgcggtgctgatgggg
cttctggaactctgcgccgacgctgaaaaacagcttgctaacatcacaattgggctgccc
ctgagtccagcagctgactccgcccgctctgcacgacacgcgctctcgctcattgccacc
gccagaccacccgccttcataacaaccatcgctaaggaggtgcacagacatacggctctg
gctgccaatacacagtctcagcagaacatccacactactgccttggctcgtgctaaaggg
gagattctgagagtcgtagaaattcttattgaaaaaatgccttcagatgttgtggatctc
ttggtggaggtcatggatatcataatgtactgccttgaagggtccttgttaaagaagaaa
ggactacaggaatgctttccttccatttgcaagttctacatggtcagctactgtgagcgg
agtcaccgaatagcagtgggagcccgcattggcacggtggccttgtatgacatccgcaca
ggaaaatgtcagaatattcatggccataaaggacctattacttcagtttcctttgcccct
gacggacgctatcttgctacctactccaacaaagacagccacatctctttctggcagatg
aacacctctcttcttgggagtatcgggatgctgaactctgccccccagctgcgatgtata
aagacgtaccaggttcctccggttcagcctgcctctcccggctccctcaatgccctaaaa
ctggcgcgtctcatctggacttccaaccgcaatgttatccttatggcccatgatggcaaa
gagcatagattcatggtttag

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