Xenopus tropicalis (tropical clawed frog): 100037842
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Entry
100037842 CDS
T01011
Symbol
notch1
Name
(RefSeq) neurogenic locus notch homolog protein 1 precursor
KO
K02599
Notch 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
100037842 (notch1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
EGF_2
Ank_2
Ank
Notch
NOD
NODP
Ank_4
Ank_3
Ank_5
EGF_3
EGF_DL_JAG
EGF_Teneurin
cEGF
DUF2574
ODAPH
Motif
Other DBs
NCBI-GeneID:
100037842
NCBI-ProteinID:
NP_001090757
Xenbase:
XB-GENE-479318
UniProt:
A2RUV0
LinkDB
All DBs
Position
8:complement(6560611..6618686)
Genome browser
AA seq
2522 aa
AA seq
DB search
MYRIGLLVLIWSLLGLAQGLRCTQTAEMCLNGGRCEMTPGGTGVCLCSSSYFGERCQYPN
PCALKNQCMNFGTCEPVLLGNAIDFTCHCPVGFTDKVCLTPVDNACVNNPCRNGGTCELL
SSVSDYRCRCPPGWTGDSCQQADPCASNPCANGGKCLPFETQYICKCPSGFHGATCKQDI
NECSQNPCRNGGQCLNEFGSYRCNCQNRFTGRNCEEPYVPCNPSPCLNGGTCRQTDDTSY
ECTCLPGFSGQNCEENIDDCPSNNCRNGGTCVDGVNTYNCQCPPDWTGQYCTEDVDECQL
MPNACQNGGTCHNTYGGYNCVCVNGWTGEDCSENIDDCANAACHSGATCHDRVASFFCEC
PHGRTGLLCHLDNACISNPCNEGSNCDTNPVNGKAICTCPPGYTGPACNNDVDECSLGAN
PCEHGGRCTNTLGSFQCNCPQGYAGPRCEIDVNECLSNPCQNDATCLDQIGEFQCICMPG
YEGLYCETNIDECASNPCLHNGKCVDKINEFHCECPTGFNGNLCQHHVDECASTPCKNGA
KCLDGPNSYTCQCTEGFTGRHCEQDINECIPDPCHYGTCKDGIATFTCLCRPGYTGRLCD
NDINECLSQPCQNGGQCTDRENGYICTCPKGTTGVNCETNLDDCASNPCDYGKCIDKIDG
YECTCEPGYTGKMCNINIDECASNPCRNGGTCKDKINGFTCVCPDGYHDHMCLSEVNECN
SNPCIHGTCHDGINGYKCDCDAGWSGSNCDVNNNECESNPCMNGGTCKDMTGAYICTCRA
GFSGPNCQTNINECASNPCLNRGTCIDDVAGYKCNCMLPYTGAICEAVLAPCSGSPCKNG
GRCKESEDYETFSCECPPGWQGQTCEIDMNECVNRPCRNGAMCQNTNGSYKCNCKPGYAG
RHCETDIDDCQPNPCHNGGSCSDGINMFFCNCPAGFRGPKCEEDINECASNPCKNGANCT
DCVNSYTCTCQPGFSGIHCENNTPDCTESSCFNGGTCIDGINTFSCQCPPGFTGDYCQHD
INECDSKPCLNGGTCQDSYGAYKCTCPQGYTGLNCQNLVRWCDSSPCKNGGKCWQTNNFY
RCECKSGWTGVYCDVPSVSCEVAAKQQGVDIAHLCRNSGMCVDTGNTHFCRCQAGYTGSY
CEEQVDECSPNPCQNGATCTDYLGGYSCECVAGYHGVNCSEEINECLSHPCHNGGTCIDL
INTYKCSCPRGTQGVHCEINVDDCTPFYDSVSLEPKCFNNGKCIDRVGGYNCICPPGFVG
ERCEGDVNECLSNPCDPRGTQNCIQLVNDYRCECRQGFTGRRCDSVVDGCKGLPCRNGGT
CAVASNTERGFICKCPPGFDGATCEYDARTCGNLRCQNGGTCISVLKSSKCVCSEGYTGA
TCQYPVVSPCASRPCYNGGTCQFSPEEPFFQCFCPTNFNGLFCHILDYGFIGGLGKNITP
PDNEEICENEQCAELADNKICNANCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFND
GKCDSQCNNSGCLYDGFDCQKVEVQCNPLYDQYCRDHFQDGHCDQGCNNAECEWDGLDCD
NMPENLAEGTLLIVVLMPPEKLKNNSVNFLRELSRVLHTNVVFKKDSKGEYKIYPYYGNE
EELKKHHIKKRSAASWSDAPTAIFSTMKESVLPGRRRRELDQMEVRGSIVYLEIDNRQCY
KSSSQCFTSATDVAAFLGALATHGNLNIPYKIEAVKSEIVETAKPPPPLYAMFSMLVIPL
LIIFVIMVVIVNKKRRREHGQLWFPEGFIPKEPSKKKRREPLGEDSVGLKPLKNLTDGSF
MDDNQNEWGDEETLENKRFRFEEQVMLPELVDDQTDHRQWTQQHLDAADLRIPSMAPTPP
QGEIDADCMDVNVRGPDGFTPLMIAACSGGGLETGNSEEEEDASANMISDFIGQGAQLHN
QTDRTGETALHLAARYARADAAKRLLESSADANVPDNMGRTPLHAAVAADAQGVFQILIR
NRATDLDARMCDGTTPLILAARLAVEGMVEELINAHADVNAVDEFGKSALHWAAAVNNVD
AAAVLLKSSANKDMQNNKEETPLFLAAREGSYETAKVLLDHYANRDITDHMDRLPRDIAQ
ERMHHDIVHLLDEHNLVKSPTLHGGPLGAPTLSPPICSPNGYMGNMKPSVQSKKARKPSI
KGNGCKEAKELKARRKKSQDGKTSLLDSGSSGVLSPVDSLESPHGYLSDVASPPLMTSPF
QQSPSMPLNHLTSMQDSHPGLNHMTMANKQEMASNRMAFDGMTPRLTHLNVSSPNTIMTN
GSMHFTVGGAPAMNGQCDWFARLQNGMVQNQYNPIRNGIQQGNAQQALQHGLMSSLHNGL
PATTLSQMMTYQAMPNTRMANQPHLMQAQQMQQQQNLQLHQSVQQQQHQNSNATSTHIGS
PFCSNDISQTDLQQMSGNNIHSVMPQDTQIFTNSLPPTLTQSMATTQFLTPPSQHSYSSP
MDNTPSHQLQVPDHPFLTPSPESPDQWSSSSPHSNMSDWSEGISSPPTSMQPQRTHIPEA
FK
NT seq
7569 nt
NT seq
+upstream
nt +downstream
nt
atgtatcggatcgggctgcttgttctgatctggtccttgctcggactcgctcaagggctg
cgatgcactcagactgcggaaatgtgcctgaacggcgggaggtgcgaaatgaccccgggc
ggaactggggtgtgtctatgcagcagttcgtatttcggggagcggtgccagtaccccaat
ccctgcgccctgaagaaccagtgtatgaactttgggacctgtgagccggtgctgctggga
aacgccatcgactttacctgccactgccccgtgggcttcaccgacaaggtgtgcctgacc
cccgtggataacgcctgcgtcaacaacccgtgccgcaacgggggaacctgcgagcttctg
agcagcgtgagcgattacagatgcagatgccccccgggatggacgggtgactcgtgccag
caggcagatccctgtgcctccaatccctgtgccaatggcggcaagtgtttgcccttcgag
acccagtatatctgcaagtgcccctctgggttccacggcgccacctgcaagcaggacatt
aacgagtgcagccagaatccctgccggaacggcggccagtgccttaatgagtttgggtcg
taccgctgcaactgccagaaccgcttcactgggaggaactgcgaggaaccgtatgtcccc
tgcaacccgtcgccgtgcctgaatggggggacctgccggcagaccgacgacacctcctat
gagtgcacttgtcttccaggctttagcggacagaactgtgaagagaacatagacgactgc
cctagcaacaactgccgcaatggcgggacctgcgtcgatggagtcaacacatacaactgc
cagtgcccaccagactggacgggccagtactgcacagaagatgtggacgagtgccaactg
atgccaaacgcttgccaaaacggggggacctgccacaacacctacggcggctacaactgc
gtctgcgtcaacggatggaccggagaggactgcagcgagaacatcgacgactgcgccaac
gctgcctgccacagtggcgccacctgtcacgaccgcgtggcctccttcttctgcgagtgc
ccccatggccggacaggtctcctttgccacctggataatgcctgtatcagcaacccctgc
aacgagggctccaactgtgacaccaacccagtcaacgggaaggccatctgtacctgccca
ccggggtacaccggcccggcttgcaacaatgacgtggatgagtgctctctaggtgccaat
ccgtgcgagcatggcggaagatgtaccaacaccctgggctctttccagtgcaactgccct
caggggtacgccggaccccgctgcgagatcgacgtcaatgaatgtctctccaacccgtgc
caaaatgacgccacgtgcctggaccagatcggagagttccagtgtatatgcatgccaggt
tacgaagggctttactgtgagaccaacatagacgaatgtgccagcaatccgtgcctacat
aacggcaagtgcgtggataaaatcaacgagttccactgcgagtgtcccacaggcttcaac
gggaacctctgccaacaccacgtggacgaatgtgccagcaccccgtgcaaaaacggtgcc
aaatgcctggacggccccaattcctacacctgccaatgtacagaaggtttcaccgggcgc
cactgtgaacaagacatcaatgaatgcattcccgatccgtgccactacggcacctgtaaa
gacggcatcgctaccttcacatgcctgtgccggcctggctacaccgggcggctgtgtgac
aatgacataaacgagtgcctgagtcagccgtgccaaaatgggggtcagtgtacggacaga
gagaacggctacatatgcacttgcccgaagggaaccacaggggtgaattgtgaaaccaat
ctagacgactgtgccagtaacccgtgcgattatggaaagtgcatcgacaagatcgacggc
tacgagtgcacctgtgagcccggctacacaggcaagatgtgcaatattaacattgatgaa
tgtgccagcaacccgtgccgcaacggagggacatgcaaagacaagatcaacggcttcacg
tgtgtgtgcccagatggctaccacgaccacatgtgcctgtctgaagtgaatgagtgcaac
agcaacccgtgtatccatgggacgtgccatgatgggatcaatgggtacaaatgcgactgt
gatgcagggtggagcggtagcaattgtgacgtcaacaacaacgaatgtgaatccaacccg
tgtatgaatggcggtacctgcaaagacatgacgggggcgtacatctgtacctgcagagca
ggatttagtgggccaaactgccaaaccaacatcaatgaatgtgcctccaacccctgcttg
aaccgcggcacgtgtatcgacgatgttgctggttacaaatgcaactgtatgctgccttat
acaggtgccatttgtgaggccgttttggctccgtgttctggcagcccctgtaaaaatggc
ggcagatgtaaagaatcggaagattatgaaaccttctcttgcgagtgtccccccgggtgg
caagggcaaacgtgcgagatcgacatgaacgaatgcgtcaatcgcccatgccggaatggc
gcaatgtgccagaacaccaacggcagttataagtgcaactgcaaacctggttacgcgggg
cggcactgcgagacggacatcgacgactgccaaccgaatccttgtcacaacggcgggtcc
tgttccgacggcatcaacatgttcttctgcaactgcccggccgggttccgagggcccaag
tgcgaagaggacatcaacgagtgtgccagcaacccgtgcaaaaatggcgccaactgcacc
gattgtgtcaacagctacacgtgtacctgccagcctgggtttagcggcatccactgcgag
aataacacccccgactgcacggagagctcttgttttaatggcggaacctgcatcgatggg
atcaatacatttagctgccagtgcccgccaggattcaccggagactactgccagcacgat
atcaacgaatgcgactctaagccttgtctgaatgggggcacctgtcaggacagctatggg
gcgtataagtgcacctgtccccaagggtacacaggactcaactgccagaacctggtgcgc
tggtgcgactcctctccctgtaagaacggaggaaagtgctggcagaccaacaatttctac
cggtgtgagtgcaagagcggctggaccggcgtttactgcgatgtccccagtgtctcctgc
gaggtggctgctaagcagcaaggcgtggatatcgcccacctgtgccgcaattcgggaatg
tgcgtggacacagggaacacccacttctgccgctgccaggccggctacacgggcagttac
tgcgaggaacaggtggacgaatgctcgcccaatccctgccagaacggcgccacgtgcaca
gattacctgggcggctactcgtgcgagtgtgtggccggctaccacggggttaactgctcg
gaggaaatcaacgagtgtttgtcccacccatgccacaatggcgggacctgtattgatctc
attaacacctacaaatgttcctgcccccgaggaactcaaggtgtgcactgtgaaatcaac
gtggacgactgcacccccttctacgactccgtcagcttggaacccaagtgcttcaacaac
ggcaaatgtatcgaccgcgtgggcggctacaactgcatctgccccccgggcttcgtgggc
gaacgctgcgaaggcgacgtgaacgagtgcttatccaatccctgcgacccccgcgggacc
cagaattgcatccagctggtgaacgattaccggtgcgagtgccggcagggattcacagga
aggcgctgcgactctgtcgtggacggttgcaaggggttgccctgcagaaacggtggaacg
tgtgccgtcgccagcaataccgagcgcggatttatctgcaaatgccctcctgggttcgac
ggagccacttgcgaatacgacgcccggacctgcggtaacctgcgctgccagaacggcggc
acatgtatctcggtgctgaagagctccaaatgcgtatgctcggaaggatacaccggcgcc
acgtgtcagtaccccgtcgtcagcccgtgcgcgtcccgcccttgttacaacggagggacc
tgccaattctcccccgaggaacctttcttccagtgcttctgccccacgaacttcaacggc
ctcttctgccacatcttggattacggcttcatcggaggcctgggcaagaacatcacccct
cccgacaatgaggaaatctgcgagaatgagcagtgcgccgagctggccgacaacaagatc
tgcaacgccaactgcaacaaccacgcctgcgggtgggacggcggcgactgctctctcaac
ttcaacgacccctggaagaactgcacccagtcgctgcagtgctggaaatacttcaacgac
ggcaaatgcgactcgcagtgcaacaactccggctgcctgtacgacggcttcgactgccag
aaagtggaggttcagtgcaaccctttgtacgaccagtattgcagggatcactttcaagac
ggccattgcgaccaaggctgtaacaacgcagagtgcgaatgggacggcctggactgtgac
aacatgccggagaacctggccgaaggcaccctgttgatagtcgtcctgatgccccccgaa
aagctgaagaacaactccgtcaacttcctccgagagctgagccgagtgctccacaccaac
gtggtgttcaagaaagacagcaaaggcgaatacaagatctacccttactatggcaacgag
gaggagctgaagaaacatcacatcaagaagaggtcggcggcttcctggtcggatgctcct
accgccatcttcagtaccatgaaggagtccgtcttaccaggaaggcgccgtagggagttg
gaccaaatggaagtcagggggtcaatcgtatacttagaaatagacaaccgccagtgctac
aaatcctcctcccagtgcttcaccagcgccaccgacgtggccgccttcctcggggctttg
gccacccatggcaatctgaacatcccctataagatcgaggctgtgaaaagtgagatagtc
gagaccgccaagccgccgccgccgctttatgccatgttttccatgttggtcatcccgttg
ctgatcatcttcgtcatcatggtggtcatcgtgaataagaagcggcgccgcgaacacggg
cagctgtggttccccgaaggcttcattccgaaagagcccagcaagaagaagcggcgagag
cccctcggggaggattccgtcggcttaaaacccctaaagaacttgacggacggctctttt
atggacgacaatcagaatgaatggggagacgaggagaccctggaaaacaagaggttcagg
tttgaagagcaagtgatgctcccggagcttgttgatgaccaaactgaccaccgacagtgg
acgcagcagcacctcgacgccgccgacctgcgcattccatccatggcccccacaccgccg
cagggagagattgatgctgactgcatggacgtcaatgttcgtggccctgatggtttcacc
ccgcttatgatcgctgcctgcagcggaggaggactggagaccggaaacagcgaagaggaa
gaggacgcctcggccaacatgatttccgacttcatcgggcagggcgcccaactgcataac
caaaccgaccgcaccggcgagacggcgcttcacctggccgcccgatacgctcgtgccgac
gcagccaagcgcctcttggagtccagtgcggacgccaacgtcccggacaacatgggcagg
acccctctccatgcagcggtggccgccgacgctcagggtgtattccagattctcattcgg
aaccgagcgaccgacttagacgcccgaatgtgcgacggcacgacccctctgatcctggcc
gcgcgtctggccgtggaagggatggtggaggagttaatcaacgctcacgcagatgtcaat
gctgtcgatgaattcgggaaatctgctttgcattgggctgcggccgtgaataacgtcgat
gctgcggccgtgctcctcaagagtagtgctaataaggatatgcagaacaacaaggaagag
acacctctgttcttggccgcgagagaaggcagctacgagactgccaaagtccttctggac
cactacgccaaccgcgacatcacggaccacatggaccgtctgccccgcgacatcgcccag
gaacgcatgcaccacgacatcgtccacttgctggatgaacacaacctagtgaagagcccg
acgctgcacggcggcccgttgggcgccccgactttatctcctcccatctgctcccctaac
ggttacatggggaacatgaagccttccgtccagagcaagaaagcccgtaagcccagcatc
aagggcaacggctgcaaagaagcgaaggagctgaaagccaggaggaaaaaatctcaagac
ggaaaaacgagtctattggattcgggcagctccggggtgttgtccccggtggactcgctg
gagtcgccccacggatacttatcagacgtggcctctcctccgttgatgacatctccgttc
cagcagtccccctccatgcctctgaaccacctgaccagcatgcaggattcccaccccggc
ctgaatcacatgaccatggccaacaagcaggaaatggcttccaacagaatggctttcgac
ggcatgacgccacgcctgacccatctcaacgtctccagccccaataccatcatgaccaac
gggtccatgcattttaccgtgggaggagctccggcgatgaacggccaatgcgactggttt
gcacggctgcaaaatgggatggtccagaaccagtacaacccaatcagaaatggcatccaa
caaggcaacgcccagcaagctcttcagcatggccttatgagctcgctccataacggtttg
ccggcgacgactctgtcccagatgatgacctatcaggccatgcccaacacgaggatggcc
aatcagcctcatctgatgcaagcccagcaaatgcaacagcagcagaacctacagttgcac
cagagcgtccagcagcagcaacatcaaaattccaacgcaacttctactcatatcggctcc
cccttttgtagcaatgacataagccagacggacctgcaacaaatgtcgggcaacaacatt
cattctgtgatgccccaggacactcagatatttacgaattccctgcctcccactcttacg
cagtctatggccaccacccagtttttaaccccgccttctcagcatagttactcctccccg
atggacaacacgccgagccatcaactacaagtaccagaccacccatttttgacgccttct
cccgagtcacctgaccagtggtcaagctcctcccctcattcgaacatgtctgattggtcg
gaaggaatatcaagcccgcccacgagtatgcagcctcagcgcacccacatacccgaagct
ttcaaataa
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integrated database retrieval system
