Xenopus tropicalis (tropical clawed frog): 100038138
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Entry
100038138 CDS
T01011
Symbol
sdc1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04512
ECM-receptor interaction
xtr04514
Cell adhesion molecules
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100038138 (sdc1)
04514 Cell adhesion molecules
100038138 (sdc1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100038138 (sdc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100038138 (sdc1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xtr04090
]
100038138 (sdc1)
00535 Proteoglycans [BR:
xtr00535
]
100038138 (sdc1)
Membrane trafficking [BR:
xtr04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
100038138 (sdc1)
CD molecules [BR:
xtr04090
]
Proteins
100038138 (sdc1)
Proteoglycans [BR:
xtr00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
100038138 (sdc1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
100038138
NCBI-ProteinID:
XP_031758827
Xenbase:
XB-GENE-494960
UniProt:
A0A803JF35
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All DBs
Position
5:complement(143192685..143228505)
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AA seq
584 aa
AA seq
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MDKLLVALYLLGVCCSVAIMDEVRSSPLDDLEASGDDEDFISGSGIEDFEVDDTVPSTSV
LPSVLIFAPENTSPQPNLDEKDAAVEHTTIEVATTKSNEDPIEELVEPVVVVGVGHDVTT
HKPTTHRPTTVKSTAGPLESSTEQNHHPHHHHPHHHHHHTTTTKPTTAKDQLEDNSDSPS
GEDKSYVHYIHHKVTTTSPPDNEEPDVQIPDQDSPSGSSSTPYMEYEETTEDPSGARIFI
GHDETATTKPSENEEDDGMFEGHHEKPTTTSSSNEAGSHVQHDHHKTTSSPSHHVEPDVE
VHHSTTAADLNKHHHHHHHHHPHHHTTPETTTSVDKNIPHHVDDSTTPADLNKHHHHHHH
HHPPTTPETTTSVDEEIPPHVDDSKAPTDLDKHHHHHHHHPHHHTTTESTTSTTSDTKHA
DEVPVEVGKGRMAHGASATSAVPVLDEEVNIPDLVDLSTGNNSAVLEEGETDSKEGESSG
EENFFFVNREVIQKGTAPPINRMINTDGAEKESSPDASHGIMERKEVLAGIIAGGVAGLA
FAVFLVGFMLYRMKKKDEGSYSLDEPKQSNGGYQKPREQREFYA
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggacaagttattggttgccctgtacttgctgggagtgtgctgctcggtggctataatg
gatgaagtgagatcctctccattggacgatctagaagcatcaggagatgacgaggacttc
atctctggctcaggaattgaggattttgaagtagatgatacagtgccttctacatcggtg
ttgccttctgtgctcatttttgcaccagaaaatacatcaccacagcccaacttagatgaa
aaagatgctgcagtagagcataccaccatagaggtggcgacaaccaagtcaaatgaagat
cctattgaggaattagttgaacctgttgttgttgttggtgtaggacatgatgtgactacg
cacaagcctactactcaccgtccaaccactgtgaaatccacagctggtccactggagagt
agcacagaacaaaaccatcaccctcatcaccatcatcctcaccaccatcatcaccataca
accacaaccaaaccaactactgccaaagatcaacttgaagataactcggatagtccatca
ggtgaggataagtcttacgttcactacattcaccacaaagtaacaactacaagtcctccg
gacaatgaggagcccgacgtgcaaattcctgaccaagactctccatctggatcatccagt
acaccttatatggaatatgaggagacaactgaagatccttctggtgcacgaatatttatt
gggcatgatgaaacggcaactacgaaaccttctgaaaatgaggaggatgatggtatgttt
gaaggtcatcatgagaagccaacaaccacaagttcgtccaatgaggcaggttcccatgtc
cagcatgatcaccataaaacaacttccagtccatcccaccatgttgagcctgatgtagaa
gtgcatcacagtacaacagctgcagatctgaataaacatcatcatcaccatcaccaccac
catcctcatcatcatacaactccagaaacaaccacgtcagttgataagaatataccacat
catgtagatgacagtacaactcctgcagatttgaataaacatcatcaccatcatcaccac
caccatcctcctacaactccagaaacaaccacatcagttgatgaggaaatacctcctcat
gtagatgacagtaaagctcctacggatctggataaacatcatcatcatcaccatcaccat
cctcatcatcatacaactacagaaagtaccacatctactacaagcgataccaagcacgca
gatgaggttcccgtagaagtgggtaagggaaggatggcccatggtgcttcagcaactagc
gctgttcctgtattggatgaagaagtcaacatccctgatctagtagacttgtcaactggt
aacaactctgctgtgctggaagagggtgaaactgactctaaagaaggtgaatcatcaggg
gaagagaacttctttttcgttaatcgtgaagttatccagaagggcacagcacccccaatc
aacaggatgataaatactgatggtgctgaaaaagaaagcagtcccgatgcatcccatgga
ataatggagaggaaagaagttttagcaggaatcattgcaggaggcgtagccggcttggca
tttgcagtctttttagttgggttcatgctctataggatgaagaagaaagacgaaggaagc
tactctttggatgaaccaaaacaatcaaatggaggataccaaaagccacgtgaacagcgg
gaattctatgcgtag
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