Xenopus tropicalis (tropical clawed frog): 100038227
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Entry
100038227 CDS
T01011
Symbol
srsf4
Name
(RefSeq) serine/arginine-rich splicing factor 4 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
xtr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100038227 (srsf4)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
100038227 (srsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
100038227 (srsf4)
Spliceosome [BR:
xtr03041
]
Common components
Common spliceosomal components
SR proteins
100038227 (srsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
Itf52_C
Motif
Other DBs
NCBI-GeneID:
100038227
NCBI-ProteinID:
XP_004911639
Xenbase:
XB-GENE-493077
UniProt:
A0A8J0R146
LinkDB
All DBs
Position
2:83363736..83373901
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AA seq
741 aa
AA seq
DB search
MSRSMMPRVYIGRLSHRARERDVERFFKGFGKIVEVDLKNGYGFVEFEDSRDAEDAVYEM
NGRELCGERVIVEHARAPRRDIRSGYGYRKGGSDKYGPPVRTMYRLRVENLSSRCSWQDL
KDFMRQAGEVTYADAHQRRQNEGVIEFRSYSDMRRALEKLDGSEINGRKIQLVEDRAGSR
NKGSSSRSRSRSRSRRSRSSHSRSRSRSRSHSRSRQRERSRSRSKERRSSRSHSRKRRES
RSISKRRRQSRSVSKGRRASRSVSKGRRASRSVSKGRRASRSVSKGRRASRSVSKGRRAS
RSVSKGRRASRSASKGRRASRSASKGRRASRSASKGRRASRSASKGRRASRSASKGRRAS
RSASKGRRASRSASKGRRASRSASKGRRASRSASKERRASRSASKGRRTSRSASKGRQES
RSVSKGRRESRSVSKGRRESRSVSKGRRESRSVSKGRRETRSVSKERRGSSDHSKGRASR
SQSKDRANGRDKSADSERSKSRSRSRGRRETDSQSKERKERVSRSTERSRSRSKERRLSR
SNSRDKKGRNESTERQELNSRKRDRSHSRERRNRSKDRDHIRSKDKHSRNRSRDRKRSRS
RDRSRERQSKRSRDRSRSKERSRRSERSRRSSRSKERSRKRSRERRSSSAERSKKVKRED
TVAFTTESDQEAENEEGSKAEVVQHAETIGVTQNEEETPKPISRSASPMEASVEAEANAI
TEACDEVSAETCTEESAEAGV
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgatcaatgatgcccagggtttatatcgggcgcctcagtcacagagcccgggaa
cgagacgtggagaggttctttaagggcttcggcaagattgttgaagtggatttaaaaaat
gggtatggttttgttgagtttgaagacagtcgtgatgcagaggacgcagtgtatgaaatg
aatggaagggaactatgtggtgagagagtcattgtggagcacgcacgtgccccaaggagg
gacatccgaagcgggtatggttaccgcaaaggtggcagtgacaagtatggccctccagtc
cgtacaatgtaccgactgagagtggagaacctatcttcaagatgcagttggcaagatcta
aaggattttatgcggcaggctggagaggttacctatgcagatgcccaccagcgtcgacaa
aatgaaggcgttatagaattccgttcctactctgacatgaggcgagcgttagaaaagctg
gatgggagtgaaatcaatgggcgcaagatacagttagtggaagacagggctggctccagg
aacaaaggctcctcatctcgcagtcgctccagatcccgctcaaggaggagtagaagcagc
cactccagatccagatcccgctctcgatcccatagtagaagccgacaacgggagaggagc
agaagtcgcagcaaagaaaggagaagcagtaggagccacagcagaaaaaggagagagagt
aggagcatcagtaagcgaaggagacagagtaggagcgtcagtaaggggaggagagcgagt
cggagcgtcagtaaggggaggagagcgagtcggagcgtcagtaaggggaggagagcgagt
cggagcgtcagtaaggggaggagagcgagtcggagcgtcagcaaggggaggcgagcgagt
cggagcgtcagcaaggggaggcgagcgagtcggagcgccagcaaggggaggcgagcgagt
cggagcgccagcaaggggaggcgagcgagtcggagcgccagcaaggggaggcgagcgagt
cggagcgccagcaaggggaggcgagcgagtcggagcgccagcaaggggaggcgagcgagt
cggagcgccagcaaggggaggcgagcgagtcggagcgccagcaaggggaggcgagcgagt
cggagcgccagcaaggggaggcgagcgagtcggagcgccagcaaggagaggcgagcgagt
cggagcgccagcaaggggaggcgaacgagtcggagcgccagcaagggcaggcaagagagt
agaagcgtcagcaagggcaggcgggagagtagaagcgtcagcaaggggaggcgagagagt
agaagcgtcagcaaggggagacgagagagtagaagcgtcagtaaggggaggagagaaaca
agaagtgttagcaaagagaggaggggtagcagcgatcacagcaagggaagagcaagtaga
agccagagcaaagatagagcaaatggaagggataagagtgcagatagtgaaaggagtaag
agccgcagtagaagcagaggaaggagggaaacagacagccagagcaaggaaaggaaagaa
agggtaagcaggagcactgagcgaagcagaagtcgtagtaaagagaggaggctaagcaga
agcaatagcagggataaaaagggaagaaatgaaagcacggagagacaagagctgaatagc
agaaagcgagataggagccatagcagagagagaagaaacaggagcaaggatagggaccac
atcagaagcaaagataagcactctagaaatcgcagtagggaccggaaaaggagccgcagt
agggatagatctagagagaggcagtcaaaacgcagcagggatagaagccgtagtaaggag
agaagccgtaggagtgaacgaagtagacgatccagccgtagcaaagagagaagcagaaag
cgaagtcgggaacgaaggagtagcagtgctgagcgctcaaaaaaagttaagcgagaagac
acagtggctttcactacagaatctgaccaggaggcagaaaatgaggaaggaagcaaggct
gaagttgtacaacatgctgaaacaattggggtcactcaaaatgaggaggagactcccaaa
cctatttccagatcagcatctcctatggaggctagtgttgaagctgaagccaatgcaatc
actgaggcatgtgatgaagttagtgcagagacctgtactgaggaaagcgcagaggctggt
gtgtga
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