Xenopus tropicalis (tropical clawed frog): 100038237
Help
Entry
100038237 CDS
T01011
Symbol
nipbl
Name
(RefSeq) nipped-B-like protein isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
100038237 (nipbl)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xtr03036
]
100038237 (nipbl)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
100038237 (nipbl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
HEAT_EZ
HEAT
Cnd3
Cnd1
Motif
Other DBs
NCBI-GeneID:
100038237
NCBI-ProteinID:
XP_012823388
Xenbase:
XB-GENE-853274
UniProt:
F6TRY6
LinkDB
All DBs
Position
1:complement(197858580..197936268)
Genome browser
AA seq
2938 aa
AA seq
DB search
MNGDMPHVPITTLAGIASLTDLLNQLPLPSPLPATTTKSLLFNGRIAEEVNCLLACRDEP
LVSQLIHSLNQVSTDHIELKDNLGSDDPEGDIPVLLQATLARNPNVFREKSLQNRYGVQS
GLMMPQYKLPQNSMHGSPVSSNYQQTTISHSPSSRFVPPQSSSTSRFIGQQSSPVPSPYA
PQSPAGYMPYSHPGSYQHQPLQQASVSSPIVAGGLRNLHENKVSGQLSGSSANHHADNSR
HGATEDYLQMVHRLGGEDSDSSIRNAASFSLRSPQSVCSPAGSEGTPKGSRPLILQTQPP
PYSSPRDAPPDILLDSPDRKQRRPKKLKISKDEKEQTEKSAMYDIISSPSKDSTKLTLRL
TRVRSSEMDQQGDMLSTMENSNMSEGDSTFNVQFPGNASKTPVTPQDLSRPLNAAACFQE
QTEFLQVQQVPVLQPNMSAAAKPPQPLVAQSQPQQTGSITPYDEVELDALAEIERIERES
AIERERFSKEVQDKDKPLKKRKQDSYPLEAGGATGGNRPASQETGSAGNGSRPALMVSID
LQQAGRGDSQATVTQDSDFARKADDTKNCNDGYISGPQEDTVFKHNPENHPTPLRKSESD
VECPDKSNKSTTAKLSTESGLEESYNETKLCDIKSEPVECSEEAKLSGDCPMETKSESCE
IDYDDNMMEYKNSEGFNEDIKTEALLNETANDVKSGDLQEDSKENENQSKSSKVDNKLEM
RQKLNTPKQKQNDGQPETPRQKLEGKSETVKQKVEVKSETSKQKAEGKSETIRQKSEGKT
DTPKQKTEGHPETPKQKSENKPETPKQKNEGKPETPKQKSDSRPETPKQKSESRPDTPKQ
KSDSRPDTPKQKSEGRQDTSRQKCEGRQEISRQKSEEHKSDGRPEAPKHKHDMKKDPNRL
STEKKPDLSKHKTDSKCDSPRVKPESRTDGAKQRVDGRPSHESSKRDRENPKQKPDDKGE
SEKHKGEMSRLRRPESLRSFNKNEQETRPGNKSDAPKIDKVEKKHRHDSDESREKHSSGE
QKQRPSSPRIKQDSKSDPSKSDPTKLKSDKPVLKSPTGKDEKRIDGNKSKVEGNKGHSDN
KTAFPSYLLGGNQGTFKNFVIPKLKRDKDGNVTQEPRRSEPKGEQKDKPEKMGIVEDLNK
GAKPVVVLQKLSLDEVQKLIKERDDKSKGSLKSNKNRPSKSSKGGIDQSVLKELPPELVA
EIESSMPLCERVKMNTRKRSTVKEKPKYTEISSGEDEESEEAFEPSRKRPKKDKADTEWQ
YDGDRERRSSGDHRRSGNDSRKSSRYRERSAEDSEMEESPPPPRLSEVARRMKKERQKKR
KAYEPKLTPEEMMDSSTFKRFSSAVENILENLEDMDFSAFGDDEEIPQEILLGKHQLSEL
GSESAKIKAMGIMNKISSEKMVKLLGILEKNIQDGAKLTTMLNHNNDTEDEEKLWRDLIM
ERVTKSADACLTAINIMTSPSMPKAVYIEDVIEHVIQYTKFHLQNTLYPQYDPVYRLDPH
GGGLMSSKAKRAKCSTHKQRVIVMLYNKICDIVASLSELLEIQLLTDTTILQVSSMGITP
FFVENVSELQLCAIKLVTAVFSRYEKHRQLILEELFTSLARLPTSKRSLRNFRLNSSDDD
GEAMYIQMVTALVLQLIQCVVHLPSDRDHAEEESNKKIDQDVFITNSYETAMRTAQNFLS
IFLKKCGSKQGEEDYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEM
ALRVASLDYLGTVAARLRKDAVTSKMDQGSINRILKQAPEGEDDIQQLQKALLDYLEENT
ETDPSLVFSRKFYIAQWFRDTTMETEKAMKSQKDDDSDGAQHAKEVESTGDIMRRAEKRK
KFLRSIIKAVPSQFSTLKSNSDTVDYDDACLIVRYLASMRPFAQSFDIYLTQILRVLGEN
AIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHGRLMDNSTSVREAAVELLGRFVLCRPQ
LAEQYYDMLVERILDTGISVRKRVIKILRDICLEQPTFPKITEMCVKMIRRVNDEEGIKK
LVNETFQKLWFTPTPQNDKEAMTRKIINITDVVAACRDTGYDWFEQLLQNLLKSEEDASY
KPVKKACTQLVDNLVEHILKYEESLADSDSKGVNSGRLVACITTLFLFSKIRPQLMVKHA
MTMQPYLTTKCSTQNDFMVICNVAKILELVVPLMEHPSETFLATMEEDLMKLIIKYGMTV
VQHCVSCLGAVVNKVTQNYKFVWACFNRYYGALLKLKSQHQEDPNSTVLTTNKPALLRSL
FTVGALCRHFDFDQEEFKGSSKVNISVNIKDKVLELLMYFTKHADEEVQTKAIIGLGFSF
IQHPGLMFEVEVKNLYNNILSDKNSSVNLKIQVLKNLQTYLQEEDTRMQQADRDWKKMSK
QEDLKEMGDISSGMSSSIMQLYLKQVLESFFSTQSSVRHFALNVIALTLNQGLIHPVQCV
PYLIAVGTDPEPAMRNKSDQQLIEIDKKYTGFIHMKAVAGIKMSYQVQQAINSNANRTVR
GFRQDESNSALCSHLYSMIRGNRQHRRAFLISLLNLFDDAAKTEVNMLLYIADNLACFPY
QTQEEPLFIMHHIDITLSVSGSNLLQSFKESMVKGKQKEKHVPIEDSNSESEEEVCRPRK
TRRRRHSGSDSDGEDNVEYVLRCLPNNASPLIEFANASQGILLLLMLKQHIKNLCGFSDS
KIQKYSPSESAKVYDKTINRKQGIHFHPKQTLEYLKRNMTKINDDLKRTIAKQYLDFKLL
MEHLDPDEEEEEGEVSASTDARNKAITNLLGGNSPKNNVAETEEEESDGEEKAGGTSGLR
KSKRLSDSSDVAAQMNETVDVQDVIAICCPKYKDRPQIAKVVQKTSHGFSVQWMAGSYSG
TWAEAKRRDGRKLVPWVDTIKESDIIYKKIALTSANKLTNKVVQTLRSLYAAKDGTSS
NT seq
8817 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggatatgcctcatgttcccataactactctagcaggaattgctagtctcaca
gacttattaaaccagctgcctcttccatctcccttacctgctacaactacaaagagcctc
ctatttaatggacggatagcagaagaggttaactgcctcctggcttgcagagatgaacct
ctggtgtcgcaactaatccacagcctgaatcaggtgtcaacagaccacatagaactgaag
gataacttggggagcgatgatcccgaaggagatataccagtcctgctgcaagccactctg
gctagaaatcccaatgttttcagggagaaaagtttgcagaacagatatggagttcaaagt
ggcttaatgatgcctcagtataaacttccccagaattccatgcatggcagccctgtatct
tccaattatcaacaaaccactatctctcatagtccttccagtcgttttgtgccaccccag
tccagttccacaagccggtttattggccaacagagcagccctgtaccgagtccatatgct
ccccaaagtccagcaggatacatgccatattcccaccctggaagttaccaacatcaacca
ttgcaacaagcttctgtttcaagccctatagttgctggggggcttaggaatctacatgaa
aataaagtttctgggcagctgtcaggcagctctgcaaaccatcatgcagataattccagg
catggcgctactgaggactatctccagatggtgcacaggctgggtggtgaggacagtgat
tcttcaataagaaatgctgcttccttttctctccgctctccgcagtctgtgtgctctcct
gctggaagtgaagggacgccaaaaggatcaaggccattaatactacagacacagcctcct
ccatattcctctcccagggatgctcctcctgacattctcttggactccccagatcgaaag
cagaggcgaccaaaaaagttaaagataagcaaagatgagaaggaacagactgagaagtct
gcaatgtatgatattattagttctccttctaaagactctaccaagctcactttaagacta
acacgtgtgagatcttctgaaatggaccagcaaggagatatgctctccactatggaaaac
agtaacatgtcagagggagatagcacttttaatgtgcagttcccagggaatgcttcaaaa
acaccggtcactccacaggacttaagtcgccctttgaatgctgctgcttgttttcaggag
caaactgaattcttacaggtgcagcaagtgcctgttttacaacccaacatgtcagcagct
gcaaaaccgcctcaacctcttgtggctcaatcacagccccaacaaacaggaagcataacg
ccatatgacgaagtggaactggacgctcttgctgaaattgagagaatagagcgggaatct
gctattgagagggaacgcttttctaaagaagttcaggacaaagataagcccctgaagaaa
cggaagcaggattcttatccattagaagctggaggtgctactggaggtaacagaccagct
tcccaggagaccggttcagctggaaatgggtcacggccagcacttatggttagtattgat
cttcagcaggccggccgaggggactctcaggcaactgtaactcaggactcggactttgcc
agaaaggcagatgacacaaagaactgcaacgatggctatatttctgggcctcaagaggac
actgttttcaagcataatcctgagaatcatccgacgccattaagaaagagtgagtcagac
gtggaatgtcccgataagtctaacaagagcacaactgctaagctgtcaactgagagtggc
ctagaagaatcttacaatgaaactaaattgtgtgacatcaaatctgaacctgttgagtgc
agcgaagaagcaaagctttctggtgactgtcctatggagaccaagtctgaaagttgtgaa
atagattatgacgacaatatgatggagtacaaaaacagcgaaggttttaatgaagatata
aagactgaagcactgttaaatgagactgcaaatgatgtaaaatctggtgacctacaagag
gattctaaagaaaatgaaaaccagagtaaatctagtaaagttgacaacaagctggaaatg
cgacaaaaacttaatactcccaagcaaaagcaaaatgatggccagccagagacacctaga
caaaaacttgaagggaagagtgagacagtaaagcaaaaagtggaggtgaaatcagaaacc
tccaaacagaaagcagagggaaaatcagagacaatcaggcaaaagagtgaggggaaaacg
gacacacctaagcaaaagactgaagggcatccggaaacacccaagcaaaagagtgaaaat
aagcctgaaacacctaaacaaaagaatgagggtaagccagaaacacctaagcaaaagagt
gatagcagaccagaaacgccaaagcaaaagagtgaaagcaggccagacactccaaaacaa
aagagtgatagcaggccggacacccctaaacaaaagagtgaagggcggcaagatacatca
aggcagaaatgtgaaggtcggcaagaaattagccgacaaaaaagtgaggagcacaaaagt
gatgggcgtcctgaagccccaaaacataaacatgatatgaaaaaagatcccaacagactt
tccacagaaaagaagccagatttatccaaacataaaacagattcaaaatgtgactctcct
agagttaagcctgagagccgtacagatggagcaaaacagagagtagatgggagacctagt
catgaatcgtcaaagcgggaccgtgagaacccaaaacagaaaccggatgacaagggggag
tctgagaaacacaaaggagaaatgtcaaggcttaggaggccagagtccttaaggtcgttt
aataagaatgaacaggaaacaagacctggaaataaatcggatgcaccaaaaatcgataaa
gtggaaaagaagcatcggcatgattcggatgagtctagggagaagcattcttctggggag
caaaagcaaagacctagtagtcccaggataaagcaagacagtaaatcagaccctagcaaa
tcggatcctacaaaattgaaatctgataaacctgttttgaaatcgcctactggtaaagat
gaaaaaaggattgatggtaacaaaagtaaagtggagggaaataaaggtcacagtgacaac
aaaactgcatttcctagttatttgttggggggaaatcagggtacgtttaaaaactttgtc
attcctaaacttaaacgggataaggatggcaatgttacccaggaacctaggcgatcggag
ccaaaaggagagcagaaggacaagccggaaaagatgggtattgtggaagatcttaataaa
ggagctaaacctgttgttgttcttcaaaagctgtctttggatgaggtacaaaaactaatc
aaggagcgggatgacaaatccaaaggatcattaaagtctaacaagaataggccctctaaa
tccagcaaagggggaattgatcagtctgtcctgaaggaacttcctccggaactggtggct
gagatcgagtcctccatgcctctctgcgagcgggtgaaaatgaacacacggaagcgaagc
acagtcaaagagaagccgaagtacacagagattagctccggagaggatgaagaaagcgag
gaagcctttgaaccttcacgtaaaagacccaaaaaagacaaagctgatacagaatggcaa
tatgatggtgaccgcgaacgaagaagttctggtgaccaccgtcgcagtggcaatgactct
aggaaaagcagtcggtacagggagcgaagtgcagaggattcagaaatggaagagtctcca
ccaccaccaaggctcagcgaagttgccagaagaatgaaaaaagagcgtcaaaagaaacga
aaagcctatgagcctaaactaacacctgaagaaatgatggattcctcaacatttaaaaga
ttttcttctgctgtggaaaatattttggaaaacttggaagacatggatttctctgcattt
ggtgatgatgaggagattcctcaggagatacttcttggaaagcaccagctgagtgagcta
ggaagcgaatctgccaagattaaagctatgggtattatgaataagatctcatctgaaaaa
atggtcaagttactaggcatactggagaaaaacattcaagatggggcgaagctgacaact
atgctgaaccataataatgacacagaagacgaggagaagctgtggagggatctgattatg
gagagagtcactaagtctgccgacgcctgcttgacagccatcaacatcatgacatcgccc
agcatgcctaaagcagtctatatagaggatgtgatagagcacgttatacagtacactaaa
ttccacttgcaaaatacactttatccacaatatgaccctgtttataggttggatcctcat
gggggtggattaatgagttctaaagcaaaaagagccaaatgttcaacccacaagcagaga
gtcattgtgatgctgtacaacaaaatctgtgacatagttgctagcttatctgagttgcta
gaaatccagcttcttacagatacaaccatccttcaggtgtcatctatgggaatcacacca
ttttttgttgaaaatgtcagtgagttgcagctatgcgctataaagctggtcactgcggtt
ttctctaggtacgaaaaacataggcaactcattttggaagagctctttacctctcttgca
agactgccaacaagtaaaagaagcctgaggaatttccggctaaacagcagtgatgatgat
ggagaagcaatgtatattcagatggtgacagcgttggtgttacagttgatacagtgtgtt
gtgcatttaccttcagacagagatcatgctgaagaggagtcaaacaaaaaaatcgaccag
gatgttttcatcaccaactcttatgaaacagcaatgagaactgcacagaactttctctct
attttccttaaaaagtgcggaagtaaacagggggaagaggattacaggccgctgtttgag
aactttgtccaggatcttctatctactgttaacaagcctgagtggcctgctgcagagctg
ctgttaagtttattgggaagactactggttcatcagtttagcaataaatcgacagagatg
gctctgagagtggcatctttagattatcttgggactgtagctgcacggctcaggaaggat
gcggtcaccagcaagatggatcaggggtctataaaccgcattctgaaacaggctccagaa
ggtgaagatgacattcagcagctacaaaaagcactgctagattacctggaggaaaataca
gagaccgacccatcattagtgttttctcggaagttttacatagcccagtggtttcgtgac
actacgatggagacagagaaagctatgaaatcccaaaaggatgatgactctgatggagca
caacatgcaaaggaggtggagtctacaggagatattatgcgtcgagcagagaaacggaaa
aagtttcttcgaagcatcattaaagctgtcccatctcaatttagcactttgaagtcaaat
tcagacactgtggattatgatgatgcgtgtttgattgtacgatacttggcctctatgagg
ccgtttgcccagagctttgatatttatttgactcagattttgcgggtacttggggagaat
gctattgctgtcagaacaaaagctatgaaatgtttgtctgaagttgttgctgtagatccc
agcattcttgcaaggctggatatgcaaagaggtgttcatgggagactaatggataactca
accagtgtccgagaagcagctgtggaattgctgggacggtttgtgctctgtaggccgcag
ctcgcggagcagtattacgatatgctcgtagagcgaattctggacactggcatcagtgta
aggaagagggtcataaagatcttgcgggacatctgtttggagcaaccgacctttcccaaa
atcaccgaaatgtgtgtaaaaatgatcaggagagtaaatgacgaagaaggcattaagaaa
ttagtgaatgaaacattccagaaactgtggtttacaccaacgcctcagaatgataaagaa
gcgatgacaaggaaaataataaacatcacagacgtagttgcagcttgtagagatactggc
tatgactggtttgaacaactgcttcaaaatttgctaaagtcagaagaggatgcctcctat
aaacctgtgaagaaggcctgtactcagcttgttgataatcttgtagagcacatactgaaa
tatgaggagtctctagctgattctgacagcaaaggtgtaaattctggtcggttggtggct
tgtataaccaccttattcctgttcagcaaaatcaggcctcagctcatggtcaagcatgcc
atgacaatgcagccgtacctaaccactaaatgtagcacacaaaatgatttcatggtgatc
tgcaatgttgcaaaaatcttggagctggtcgttccactgatggagcatcctagcgagacc
ttcttggcaacaatggaggaagatcttatgaaactcatcataaaatacgggatgacggtg
gtacagcattgtgtcagttgtctcggtgcagttgtaaataaagtaacacagaactacaag
tttgtttgggcctgttttaataggtattatggtgctcttttaaagttaaaaagtcagcat
caggaagatccaaacagtacagtcctgaccacaaacaaaccagcactgctgcgctcactg
tttactgttggagcactgtgtcgccattttgatttcgatcaggaagagtttaagggcagc
agcaaagtaaatatttcggttaacattaaagataaagttctggagctcttaatgtatttt
acaaagcatgcagatgaggaggtgcagacaaaagccattattggtcttggtttttcattc
attcagcatccaggtctgatgtttgaagtggaagtgaaaaatttgtacaacaacatactc
tccgataagaacagttctgtaaatttaaaaatccaagttctcaaaaacctccaaacctat
ttacaagaagaagatacccgtatgcaacaggctgatagggactggaaaaagatgtccaag
caggaagatttaaaagagatgggcgatatttcctcagggatgagcagctcaattatgcag
ctttacctcaaacaggtcttggagtccttttttagcactcagtccagtgtacgccacttt
gccctaaatgtcatcgcactgactttgaaccaagggctcatccatcctgttcagtgtgtg
ccatatctgattgcagtgggaacagacccagagccagccatgcggaacaaatcagatcag
cagctaattgaaatagacaagaaatacactggatttattcatatgaaagctgtggctggc
ataaagatgtcataccaagtgcagcaagcaattaattcaaatgcaaatcggacagtgcgt
gggttccggcaggatgaatctaatagcgctttgtgctcccacctgtactccatgatccga
gggaaccgccagcacaggcgagcgtttctaatctcgctgctcaatctcttcgatgatgcc
gcgaaaacagaagtgaatatgctcttgtatatagcagacaatctagcatgttttccatat
caaacccaggaagagcctctcttcatcatgcatcacatagacatcacattgtctgtgtct
ggcagcaacctcttgcagtccttcaaagagtcaatggtgaaggggaaacaaaaagagaag
cacgtgcctattgaagacagcaacagcgaaagcgaggaagaagtctgtcgcccaaggaaa
acaaggcggcgaagacactccgggtctgactctgatggagaagacaatgtggaatatgtg
cttagatgcctcccaaataatgcttctcctctcattgagtttgcaaatgcctcccaagga
atcttattgctactgatgctcaagcagcatataaagaacctttgtgggttctcggatagt
aaaattcagaagtattccccatctgaatcagctaaagtgtacgacaagacgataaacaga
aaacaaggtatccatttccaccctaagcagacccttgaatacttaaagaggaatatgacg
aagattaatgatgatctcaagaggacaattgcaaaacaatatttggatttcaagttgctg
atggagcacttggatcccgatgaagaggaggaggaaggtgaggtatcggcgagcacggat
gccagaaataaagccattaccaacttactaggaggtaacagtcctaaaaacaatgtggct
gagacagaggaggaagagagtgatggggaggagaaagcagggggcacatcagggctaaga
aaatcaaaaagattatcagattcttcggatgtggcagcgcagatgaacgaaactgtagat
gtccaagatgttattgcaatttgttgtccaaagtacaaggatcggccacagattgcaaaa
gtagtgcagaaaaccagccatggcttcagtgttcaatggatggcaggctcctacagtggc
acctgggccgaagccaaacgccgggacggcagaaaactggtgccttgggtagacactatc
aaagagtcagacattatttacaaaaaaattgctctgacgagcgctaataagctgactaat
aaagttgttcagactttacgatcgctgtatgcagccaaggacgggacttccagctaa
DBGET
integrated database retrieval system
