Xenopus tropicalis (tropical clawed frog): 100101689
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Entry
100101689 CDS
T01011
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF
KO
K23195
transcriptional repressor CTCF
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
100101689 (ctcf)
03036 Chromosome and associated proteins [BR:
xtr03036
]
100101689 (ctcf)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100101689 (ctcf)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
100101689 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
Zf-C2H2_ZNF451_C
zf-C2H2_REST
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_ZN142
LIM
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
100101689
NCBI-ProteinID:
NP_001116268
Xenbase:
XB-GENE-862914
UniProt:
F6WWS9
LinkDB
All DBs
Position
4:41118554..41142012
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AA seq
734 aa
AA seq
DB search
MESEMAEAVVEDSETFMKRKETKTYQRRREGGVDEDNCVIVQSQTDISEVPHDVNSNVQM
VMMEQLDPTLLQMKTEVMEGVVSQEGDPTVDDTQIITLQVVNMEEQPINLGELQLVQVPV
AVPMATTSVGELHAAFENEVSKEGLQEGEPMICHTLPLPEGFQVVKVGANGEVETLEQAE
LQQQEEPGWQKDPDYVPPIKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSDVNA
EKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRA
FRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVE
VSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTM
KMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDTVFHERYAL
IQHQKSHKNEKRFKCDQCEYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDMHF
KRYHDPSFVPAAFVCSKCGKTFTRRNTMSRHADNCTGPDGTDGENGGESEVVHKKGKRGR
KRKMRSKKEGSSDSEDNAEPELEDDDDEDEDDEDETPVEIEADPEPEEPLTPLPPPAKKR
RGRPPGKANQAKQNAAVIQVDDHSNRAIENIIVQVKKESDLEAEGGVEAAVPTPAVEAPN
GDLTPEMILSMMDR
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtgaaatggcggaagccgttgtggaggactcggaaaccttcatgaaaagaaaa
gagacaaagacatatcagaggcgtagggaaggtggtgtagatgaagataactgtgtcata
gtccaaagccagacagatataagtgaagtacctcatgatgtcaacagtaatgttcagatg
gtgatgatggagcaacttgatcccaccctattacaaatgaagactgaagttatggaaggt
gtggtttcacaagaaggtgatcctactgtggacgatacacaaataattacactacaggtt
gtcaatatggaagagcagccaattaatcttggagagcttcagcttgtccaagttccagta
gctgttccgatggccacaacatcggtaggtgaacttcatgcagcttttgaaaatgaggta
tccaaagaaggccttcaggaaggggagcccatgatatgtcataccttacctcttccagag
ggtttccaagtagttaaggtaggggcaaatggagaggtagaaactctagaacaggcagag
ttacaacaacaagaagaacctggctggcaaaaggatcctgattatgtgccccctatcaaa
aaaacaaagaaaactaagaaaagcaaactgcgctacacagaagaaggaaaagatgttgat
gtctctgtctatgattttgaagaagagcaacaggaaggactgctttctgatgtgaatgca
gaaaaggttgttggaaatatgaagcctccaaagccaacaaaaattaagaagaaaggtgtg
aagaagacgttccagtgtgagttatgtagttacacctgtccaagacgttctaacctggat
cgccacatgaaaagccacaccgatgaaaggccacacaagtgccacctatgcggaagggct
ttcaggactgttactttgcttaggaaccacctcaatactcatacaggtactcggccacac
aagtgtcctgactgtgacatggcatttgtaactagtggtgaattggtcagacatcgtcgt
tataaacacacccatgaaaaaccattcaaatgttcgatgtgtgattatgccagtgttgag
gtaagtaagctgaagcggcatattcgatcacatactggagaacgtcccttccaatgcagc
ttgtgcagctatgccagcagggacacatacaagttgaaaagacacatgcgaacccattca
ggtgaaaagccatacgaatgctacatttgccatgctcgttttacgcagagtgggaccatg
aagatgcatattttgcagaaacacactgaaaacgtggccaaatttcattgtccccattgt
gacacagtaattgcaaggaagagtgacttgggtgtccatttgcgaaagcaacattcctac
attgagcaaggaaagaagtgtcgctactgtgacacagtgttccatgagcgttatgcacta
atccagcaccagaagtctcataaaaatgaaaaacgatttaaatgtgaccagtgtgaatat
gcttgcagacaggagcgacacatgattatgcacaaaaggacccatactggtgagaagcct
tatgcctgtagccattgtgataaaacatttagacagaaacagctgcttgatatgcacttc
aaaagataccatgacccaagttttgttcctgcagcatttgtgtgctccaagtgtgggaaa
acatttactcgaaggaatacaatgtcaagacatgcagataattgcactgggcctgatggt
acagatggtgaaaatggaggagaaagtgaagtggttcacaaaaaagggaagcgtggtcgc
aagagaaagatgcgctccaagaaagaaggttcttctgacagtgaggataatgctgaacct
gagctggaagacgatgatgatgaagatgaagacgatgaagatgagacacctgtagaaata
gaagctgatcctgaaccagaagagccactgactccacttccaccccctgcaaagaagcgt
agaggaagaccgcctggtaaagccaaccaagcaaagcaaaatgcagctgttattcaggtg
gatgatcacagcaacagagcaattgagaacataattgttcaggtgaagaaagaatccgac
ctagaagcagaggggggtgtggaggctgctgtaccaacacctgcagtggaggcaccaaat
ggagaccttactccagaaatgatactgagcatgatggaccggtga
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