Xenopus tropicalis (tropical clawed frog): 100101710
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Entry
100101710 CDS
T01011
Symbol
pcdh20
Name
(RefSeq) protocadherin-20 precursor
KO
K16498
protocadherin delta 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100101710 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xtr01009
]
100101710 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xtr04515
]
100101710 (pcdh20)
Protein phosphatases and associated proteins [BR:
xtr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100101710 (pcdh20)
Cell adhesion molecules [BR:
xtr04515
]
Cadherins
Protocadherins
100101710 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
RET_CLD1
SGBP_BT4661-like
He_PIG
Motif
Other DBs
NCBI-GeneID:
100101710
NCBI-ProteinID:
NP_001093700
Xenbase:
XB-GENE-484153
UniProt:
A4IIL5
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Position
2:129582809..129588745
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AA seq
894 aa
AA seq
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MGQHSSPLRVILQTAQHLLFLWLLAHVRGSLFSLASNSRATELLYTLQEGLPKGVHIGSI
GDDLQLDVFADPPLSFSLASKGLSEKYVNLNNSTGELCTSSEELDREALCPHSLVAQECV
LLLDIIILPQEYFRLIKVKIAIIDINDNAPHFPVPQIYISVPENAPVNTRIVIEHPAYDP
DGGTNGVQTYRLVDYHGVFTLDVEENESGERTPYLIIMGPLDRETKAEYETTIIAEDGGS
PPLVGSATLSILISDVNDNCPQFNASQINATLYGNSTIGTQVVTVHAMDRDLGPNALITY
AFSERVPQAVKEYFHLDELKGIIKLSKRIDGSTVQQHKLTILANGPGCIPAVITVFISIN
KITFRPPELIPRYIANEENGVIYLKELEPVHSPLAFFTIKDPDEKYQVNCYLEGQGPFRL
SAFKPYNNEYLLETTDALDYELKQSYNIAVVALSRDGHQVKKLLKVQILDENDNSPVFTE
STVEITIEENNEPNAFLAKLYATDADSNESGQVSYFLGPDAPSYFTLDSVTGILSVSTIL
DREEKEKYRFTVKARDAGFPSRESVATVHITVLDKNDNNPRFISKDFSFFVPENFPGFGE
IGVISVTDADSGQNGWIALSIGNGSDIFVIDNGKGLLRAKVSLDREQQSSYTLWVEAVDG
GDPTLSSTAKITILLLDVNDNPPMVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMN
AVIAYSIIGRRGPKPESFRIDPITGNITLEEALMINDCGLYRLLVKVSDHGYPEPLFSTV
MVNLFVNDTVTNESYIETLLKKEPDINIEEKEPQIAMEPSQKEMESDSCTPTLVTLSIIC
LGSVILVTLMGMYICLRKGKNDHRINENAEVQIPLNRKIDFHMLEKRPIEISNI
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atggggcagcacagcagcccgctcagggtcattctccaaactgctcagcacttgttgttt
ctgtggctgctcgctcacgtcaggggatctctcttcagtttggcgagtaacagcagggcc
acggaattgctttacacgctgcaagaaggcttgcctaagggagttcatataggaagcatt
ggggacgatctgcagctggatgtctttgctgatcctcctctgtcattcagcctggcatca
aaggggctgagtgagaagtacgtgaatctcaataacagcacaggcgagctgtgcacatca
tccgaggagcttgacagggaagctctctgcccacattcactggttgctcaggagtgtgtg
ctgcttcttgatataatcattttgcctcaggaatatttcagacttatcaaagttaagatt
gccatcattgacatcaatgacaatgctccacatttccctgtgccacagatttatatttca
gtcccagaaaatgctcccgttaacacgcggatagttatagagcacccagcttatgaccct
gatggtggaacgaatggggtccagacttacaggctggtggattaccatggtgtcttcaca
cttgatgttgaggagaatgagagtggggagaggacaccctaccttattatcatgggccct
ttggacagagaaacgaaagctgagtatgaaaccacaattattgcagaagacgggggtagt
cctccactcgtggggtctgccacactgtctatactgattagcgatgtaaatgacaactgc
ccccaattcaatgcatctcagattaatgcaactctgtatgggaattccactatagggaca
caagttgttacagtgcatgccatggatagagacttaggtcccaatgctctgataacatat
gccttcagtgaaagggtgccacaggcagtaaaggaatacttccacctggatgagctgaaa
gggattataaaactttcaaagagaattgacggaagcactgtccagcagcataaattaaca
atacttgccaatggtccgggctgcattccagctgtgattactgtattcatttccataaat
aaaatcactttcaggcccccggagctcatacctcgatatattgctaatgaggaaaacggt
gttatctacctgaaggaattggagcctgtccattctccacttgcgttttttaccataaaa
gacccggatgaaaaatatcaagtgaattgctacctagaaggacaagggccatttagactt
tctgcatttaagccatataataatgaatatttgctagaaacaacagatgcactagactat
gagctgaaacagtcctataacatagcagtggttgcacttagtcgggatgggcatcaggtt
aaaaagcttctaaaagtccaaattctggatgagaatgacaattcccctgttttcacagaa
tctactgtagagataactattgaagaaaacaatgagcccaacgcatttctggctaaactt
tatgccacagatgctgacagtaatgaaagtggtcaggtatcttattttctagggccagat
gcaccttcctactttactttagatagcgtgacaggcattctttcagtttctaccatattg
gatcgagaggaaaaagaaaaatacaggtttacagtaaaagcaagagatgctggctttcct
tcgagggaatctgttgctacagttcatatcacggtgctagataaaaatgacaataatcct
cgttttatcagcaaagatttcagttttttcgtgcctgaaaattttccaggatttggtgaa
attggagtaattagtgtcacagatgctgactctgggcagaatggatggatagctctatct
atagggaatggaagtgatatttttgttattgacaatggcaaaggactgctaagggccaag
gtttctctggacagggagcaacagagctcctatactctttgggttgaagctgttgatggt
ggggaccctacattgtcttctacagctaaaataacaatcttgcttttggatgttaatgat
aacccaccaatggtcctcttccctcagtccaatatgtcatatctacttgttctaccctcc
actctcccaggttcacctgtcacagaagtttatgctgttgataaagacacaggcatgaat
gctgttattgcctacagtatcataggtcgacggggacccaaaccagaatcatttaggatt
gaccccataacaggcaacatcactttggaggaggcacttatgattaatgactgtggattg
tacaggttattagtaaaagttagtgaccatggctacccagaaccgctcttttccacagta
atggtaaatctctttgttaatgacactgtcactaatgaaagttatattgagaccttactg
aaaaaggagcctgatatcaatatagaagaaaaagagccacaaatagcaatggagccgtcc
cagaaagagatggaaagtgattcatgcacaccgacattggttactctgtcaataatatgc
ctgggctctgtcattttggtcactttgatggggatgtacatctgcttaagaaaaggtaaa
aatgaccacagaataaatgagaacgcagaagttcaaattccattaaacaggaaaatagac
ttccatatgctggaaaagaggccaatagagatttctaatatttaa
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