| Entry |
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| Symbol |
scaf8
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| Name |
(RefSeq) SR-related and CTD-associated factor 8 isoform X2
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| KO |
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| Organism |
xtr Xenopus tropicalis (tropical clawed frog)
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| Brite |
KEGG Orthology (KO) [BR:xtr00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:xtr03021]
100101752 (scaf8)
03041 Spliceosome [BR:xtr03041]
100101752 (scaf8)
Transcription machinery [BR:xtr03021]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100101752 (scaf8)
Spliceosome [BR:xtr03041]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
100101752 (scaf8)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
5:53295103..53395784
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| AA seq |
1271 aa
MEAVKTFNSELYSLNDYRPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQDKDLFAPRFSNNIINTFQNLYRCPADDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAVSNTPGTPVTPVTPANIVQGIPDPWIA
QINNTDTLAAVAQILQSPQGQQLQQLVQSLHIQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAASTNPLNQLEQSVSLSKKLMDRFDFGDDSNQQEDPKKETQQIPLIPESVNNSIFHQ
LAEHLQQQNLEHLRQQLLEQQHSTKVTAQETQDFMSESENSATPSQDDSQQPFLESESQM
HASMNMQQEDMDIEETLDGNEEIFEKEEKKVMKEEAPRTRSKSHSRSPRKRRSRSRSGSR
KRKHRKRSRSRSRERKRKTSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQ
VDKKATQQDLTNVFEEFGQIESINMIPPRGCAYVCMVHRQDSYRALQKLSSSSCKIGSKI
IKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQESVNNDWKAQK
SSEAVGAKESTPDNATVVPTTIVTSAPIPVVTTAAQASAVQKNSTVTSQPEAYTQPVAVL
QIPVAPAVSLVPPAFPVSMTVPPPGYSAIPPPPFMRASFNPSQPPPGFIPPPLPPPAIPP
PAISSALPAATQSTVNSNTGILGVQPPSSVTANLPHVNITTRMTGMPLLDVRQGLLSQTA
STRFTLLHPGIPPLPPPPRSMLPPGLIDPNIHPLPFPLGDMVSLSDRSFGVQGRLDADTV
NVKEKRQPLPNSNIQEGDQDYRFPPVESRQNTCKPSTEKHESEAISSAGNKEMQGVRGTD
ESVQARNADDDHEPQDMAVVDPSESQEKSMDETGVAHLSSEELHGDERKPDTDAFEGLRR
PVQQGYDNKGTNILDAHEGQVRQPLDDKQHFRGPAIDMLAPFQRYPGEIFPRPALGRRDH
FGMPYLETHDRFGRPSMESPFRPPLLDGRNHYGRPPMDGREHFGRPPPDIRENHGRTFVD
SAGKQLHFPAEKPWGHQEDFDERPHPSFIGFQGLKGFHDERHHHGNFRQEHRNTPNWNRG
FEQAKHRDFDDRRHSWERQVDRDERDFDFRREVNGDPFGRERQSENWAPPQPQPHAFEYF
PEATSAQNSSDPQVNGEKAETSNQKETVSKSDDLELCEQKETSVKESEENDTKKTETESQ
IVVESTETEGT |
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| NT seq |
3816 nt +upstreamnt +downstreamnt
atggaggccgtcaaaacctttaacagcgagctatattcactgaatgactacaggccacct
atttctaaagccaaaatgacccagataactaaggctgctatcaaagctattaagttttac
aagcatgttgttcaaagtgttgagaaattcatccagaagtgcaagccagaatataaggtt
cctggactatatgtcattgattcaattgtccgtcaatccagacatcagtttggtcaagat
aaggatctttttgcaccccggtttagcaataacataattaatactttccagaatctgtac
cgttgtcctgcagatgacaagagcaaaattgtaagagttctgaatctctggcagaagaat
aatgtgtttaagagtgaaattattcagccacttcttgatatggctgctggtatccctcct
ccagttgtcactccggtgttacccagtactactgctgcagtgagcaacactccaggaaca
ccagtaaccccagttacaccagcaaatattgttcagggaatacctgatccgtggattgca
cagataaacaatacagatacccttgctgctgtggcacagattctgcaaagccctcaaggg
caacagcttcaacagcttgtacagtctttgcacatccaacagcagaagcctcagccttct
ctcctacaagcactagatgctggccttgtagttcaattgcaggcacttacagctcaactt
acagcagcagctgcttctactaatcctctcaaccaattagaacaaagtgtttcactcagc
aagaaattaatggataggtttgattttggagatgactcgaaccagcaagaagatccaaaa
aaggagacccaacaaatccctctgattccagaatctgtgaataactcaattttccatcaa
cttgcggaacatttgcagcaacaaaatcttgagcatcttcgacagcaattactggaacag
caacattctacaaaggtaacagctcaggaaactcaggactttatgtctgaatcagaaaat
tctgcaacaccttcacaggatgacagtcaacagccatttctggagtctgaatcccaaatg
catgcctccatgaacatgcaacaagaagatatggacattgaggaaacgctagatggaaat
gaagagatatttgaaaaagaggaaaagaaagtaatgaaagaagaagcacctaggacacgt
tcaaagtctcactcaaggtcaccaaggaaaagacgatcacgatcacggtctggctccagg
aagcgcaaacacagaaaacgctcacgttcgcggtcaagagaaagaaaacgcaaaacatcc
cgctcatattcaagtgaaagaagagcaagagagcgagagaaggaacggcagaaaaaaggc
ctccctcctatcagatccaaaacacttagtgtttgcagcaccacgctttgggttggtcaa
gttgacaaaaaagccacacagcaggatttgaccaatgtatttgaagagtttggacagatt
gaatcaataaatatgattccaccaaggggctgcgcatatgtctgcatggttcatagacaa
gattcctaccgggctcttcagaagcttagttctagctcatgtaagattggatccaaaatc
atcaagattgcttgggctttgaacaaaggtgtgaaaacagaatataagcaattctgggat
gttgatcttggagtaacatatataccatgggaaaaagtcaaagttgatgacttagaagga
tttgctgaaggtggaatgattgatcaggagagtgtgaataatgactggaaagcgcagaaa
agttctgaagcagttggtgctaaagagtccacacctgataatgcaacagtagtccctact
accattgtcacctctgctcccattccagttgtcactacagctgcccaggcttcagctgtt
cagaagaattctacagtaacctcacagcctgaggcatatactcagcctgttgcagtgctt
cagataccagttgctccagctgtaagcctagttccgccagcatttcctgtctcaatgact
gtacctccaccaggctattctgcaattccaccacctcctttcatgagggcttcttttaat
ccttcgcagccaccaccaggttttatcccacctcctcttcctccacctgccattcctcct
ccagctattagctctgcacttccagcagctactcaaagtacagtgaacagcaacactgga
atattaggtgtgcaaccaccatcatcagttacagcaaacttgcctcatgtaaacatcact
actcgaatgacgggtatgcctttgttagatgttcgccaaggcttgctttcacagactgca
tcaacaaggttcactttgttacatccaggaatacctccactcccaccaccaccaagaagc
atgctccctccaggactgattgacccaaatattcatccattgcctttccctctaggggat
atggtgtctctttctgacagatcttttggagtccaaggcagattagatgccgatactgtt
aatgtaaaagaaaagaggcagcctttgccaaacagtaatattcaggagggagatcaagat
tatcgttttcctccagttgaaagtcgccaaaatacatgtaaaccatctacggaaaaacat
gaaagcgaggcaatctcaagtgcaggcaacaaagaaatgcaaggagtaagaggtacagat
gaaagtgttcaagcaagaaatgcagatgatgaccatgagccacaggacatggctgttgta
gatccttctgaaagtcaagaaaaatctatggatgagactggtgtagctcatttatcaagt
gaggagttacatggggatgaaagaaagcctgatacagatgcctttgaaggtttaagacgg
cctgtccaacaaggatatgacaataagggaacaaatattctagatgctcatgaaggccaa
gtaagacaaccactagatgacaaacaacattttagaggcccagcaatagacatgttagca
ccatttcaaaggtatccaggagagatttttcctcgcccagctttagggagaagggatcac
tttggaatgccgtatttagagacacatgatcgttttggcaggccatctatggagagtcct
tttagaccacctcttttagatggcagaaaccattatgggaggccaccaatggatggtaga
gagcattttggaagaccacctccagatataagagaaaatcatggaagaacatttgtggat
agtgctgggaagcaattacatttcccagcagaaaagccatggggacatcaagaagatttt
gatgaaagaccccacccttctttcattggttttcaaggactaaagggctttcatgatgaa
aggcatcatcatggaaactttagacaggagcatcgaaatactccaaactggaacagaggg
tttgaacaagctaaacatagggattttgatgaccgtcgtcactcatgggaaagacaggtt
gatagggatgaaagagattttgatttccgtagagaagttaatggtgacccttttggaaga
gagagacagtccgaaaactgggcacctccacagcctcagccacatgcttttgagtatttc
ccagaggccacttctgctcagaacagtagcgaccctcaagttaatggagaaaaagcagag
actagcaatcaaaaagaaactgtaagcaaatctgatgatcttgaactctgtgaacagaaa
gagacttcagttaaagagagcgaagagaatgacaccaagaaaactgagacagaaagtcaa
attgtggttgaaagcacagagactgaagggacataa |
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