Xenopus tropicalis (tropical clawed frog): 100101752
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Entry
100101752 CDS
T01011
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X2
KO
K13191
RNA-binding protein 16
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100101752 (scaf8)
03041 Spliceosome [BR:
xtr03041
]
100101752 (scaf8)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100101752 (scaf8)
Spliceosome [BR:
xtr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
100101752 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
Motif
Other DBs
NCBI-GeneID:
100101752
NCBI-ProteinID:
XP_002931573
Xenbase:
XB-GENE-919922
UniProt:
A0A8J0QIG2
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All DBs
Position
5:53295103..53395784
Genome browser
AA seq
1271 aa
AA seq
DB search
MEAVKTFNSELYSLNDYRPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQDKDLFAPRFSNNIINTFQNLYRCPADDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAVSNTPGTPVTPVTPANIVQGIPDPWIA
QINNTDTLAAVAQILQSPQGQQLQQLVQSLHIQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAASTNPLNQLEQSVSLSKKLMDRFDFGDDSNQQEDPKKETQQIPLIPESVNNSIFHQ
LAEHLQQQNLEHLRQQLLEQQHSTKVTAQETQDFMSESENSATPSQDDSQQPFLESESQM
HASMNMQQEDMDIEETLDGNEEIFEKEEKKVMKEEAPRTRSKSHSRSPRKRRSRSRSGSR
KRKHRKRSRSRSRERKRKTSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQ
VDKKATQQDLTNVFEEFGQIESINMIPPRGCAYVCMVHRQDSYRALQKLSSSSCKIGSKI
IKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQESVNNDWKAQK
SSEAVGAKESTPDNATVVPTTIVTSAPIPVVTTAAQASAVQKNSTVTSQPEAYTQPVAVL
QIPVAPAVSLVPPAFPVSMTVPPPGYSAIPPPPFMRASFNPSQPPPGFIPPPLPPPAIPP
PAISSALPAATQSTVNSNTGILGVQPPSSVTANLPHVNITTRMTGMPLLDVRQGLLSQTA
STRFTLLHPGIPPLPPPPRSMLPPGLIDPNIHPLPFPLGDMVSLSDRSFGVQGRLDADTV
NVKEKRQPLPNSNIQEGDQDYRFPPVESRQNTCKPSTEKHESEAISSAGNKEMQGVRGTD
ESVQARNADDDHEPQDMAVVDPSESQEKSMDETGVAHLSSEELHGDERKPDTDAFEGLRR
PVQQGYDNKGTNILDAHEGQVRQPLDDKQHFRGPAIDMLAPFQRYPGEIFPRPALGRRDH
FGMPYLETHDRFGRPSMESPFRPPLLDGRNHYGRPPMDGREHFGRPPPDIRENHGRTFVD
SAGKQLHFPAEKPWGHQEDFDERPHPSFIGFQGLKGFHDERHHHGNFRQEHRNTPNWNRG
FEQAKHRDFDDRRHSWERQVDRDERDFDFRREVNGDPFGRERQSENWAPPQPQPHAFEYF
PEATSAQNSSDPQVNGEKAETSNQKETVSKSDDLELCEQKETSVKESEENDTKKTETESQ
IVVESTETEGT
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaaacctttaacagcgagctatattcactgaatgactacaggccacct
atttctaaagccaaaatgacccagataactaaggctgctatcaaagctattaagttttac
aagcatgttgttcaaagtgttgagaaattcatccagaagtgcaagccagaatataaggtt
cctggactatatgtcattgattcaattgtccgtcaatccagacatcagtttggtcaagat
aaggatctttttgcaccccggtttagcaataacataattaatactttccagaatctgtac
cgttgtcctgcagatgacaagagcaaaattgtaagagttctgaatctctggcagaagaat
aatgtgtttaagagtgaaattattcagccacttcttgatatggctgctggtatccctcct
ccagttgtcactccggtgttacccagtactactgctgcagtgagcaacactccaggaaca
ccagtaaccccagttacaccagcaaatattgttcagggaatacctgatccgtggattgca
cagataaacaatacagatacccttgctgctgtggcacagattctgcaaagccctcaaggg
caacagcttcaacagcttgtacagtctttgcacatccaacagcagaagcctcagccttct
ctcctacaagcactagatgctggccttgtagttcaattgcaggcacttacagctcaactt
acagcagcagctgcttctactaatcctctcaaccaattagaacaaagtgtttcactcagc
aagaaattaatggataggtttgattttggagatgactcgaaccagcaagaagatccaaaa
aaggagacccaacaaatccctctgattccagaatctgtgaataactcaattttccatcaa
cttgcggaacatttgcagcaacaaaatcttgagcatcttcgacagcaattactggaacag
caacattctacaaaggtaacagctcaggaaactcaggactttatgtctgaatcagaaaat
tctgcaacaccttcacaggatgacagtcaacagccatttctggagtctgaatcccaaatg
catgcctccatgaacatgcaacaagaagatatggacattgaggaaacgctagatggaaat
gaagagatatttgaaaaagaggaaaagaaagtaatgaaagaagaagcacctaggacacgt
tcaaagtctcactcaaggtcaccaaggaaaagacgatcacgatcacggtctggctccagg
aagcgcaaacacagaaaacgctcacgttcgcggtcaagagaaagaaaacgcaaaacatcc
cgctcatattcaagtgaaagaagagcaagagagcgagagaaggaacggcagaaaaaaggc
ctccctcctatcagatccaaaacacttagtgtttgcagcaccacgctttgggttggtcaa
gttgacaaaaaagccacacagcaggatttgaccaatgtatttgaagagtttggacagatt
gaatcaataaatatgattccaccaaggggctgcgcatatgtctgcatggttcatagacaa
gattcctaccgggctcttcagaagcttagttctagctcatgtaagattggatccaaaatc
atcaagattgcttgggctttgaacaaaggtgtgaaaacagaatataagcaattctgggat
gttgatcttggagtaacatatataccatgggaaaaagtcaaagttgatgacttagaagga
tttgctgaaggtggaatgattgatcaggagagtgtgaataatgactggaaagcgcagaaa
agttctgaagcagttggtgctaaagagtccacacctgataatgcaacagtagtccctact
accattgtcacctctgctcccattccagttgtcactacagctgcccaggcttcagctgtt
cagaagaattctacagtaacctcacagcctgaggcatatactcagcctgttgcagtgctt
cagataccagttgctccagctgtaagcctagttccgccagcatttcctgtctcaatgact
gtacctccaccaggctattctgcaattccaccacctcctttcatgagggcttcttttaat
ccttcgcagccaccaccaggttttatcccacctcctcttcctccacctgccattcctcct
ccagctattagctctgcacttccagcagctactcaaagtacagtgaacagcaacactgga
atattaggtgtgcaaccaccatcatcagttacagcaaacttgcctcatgtaaacatcact
actcgaatgacgggtatgcctttgttagatgttcgccaaggcttgctttcacagactgca
tcaacaaggttcactttgttacatccaggaatacctccactcccaccaccaccaagaagc
atgctccctccaggactgattgacccaaatattcatccattgcctttccctctaggggat
atggtgtctctttctgacagatcttttggagtccaaggcagattagatgccgatactgtt
aatgtaaaagaaaagaggcagcctttgccaaacagtaatattcaggagggagatcaagat
tatcgttttcctccagttgaaagtcgccaaaatacatgtaaaccatctacggaaaaacat
gaaagcgaggcaatctcaagtgcaggcaacaaagaaatgcaaggagtaagaggtacagat
gaaagtgttcaagcaagaaatgcagatgatgaccatgagccacaggacatggctgttgta
gatccttctgaaagtcaagaaaaatctatggatgagactggtgtagctcatttatcaagt
gaggagttacatggggatgaaagaaagcctgatacagatgcctttgaaggtttaagacgg
cctgtccaacaaggatatgacaataagggaacaaatattctagatgctcatgaaggccaa
gtaagacaaccactagatgacaaacaacattttagaggcccagcaatagacatgttagca
ccatttcaaaggtatccaggagagatttttcctcgcccagctttagggagaagggatcac
tttggaatgccgtatttagagacacatgatcgttttggcaggccatctatggagagtcct
tttagaccacctcttttagatggcagaaaccattatgggaggccaccaatggatggtaga
gagcattttggaagaccacctccagatataagagaaaatcatggaagaacatttgtggat
agtgctgggaagcaattacatttcccagcagaaaagccatggggacatcaagaagatttt
gatgaaagaccccacccttctttcattggttttcaaggactaaagggctttcatgatgaa
aggcatcatcatggaaactttagacaggagcatcgaaatactccaaactggaacagaggg
tttgaacaagctaaacatagggattttgatgaccgtcgtcactcatgggaaagacaggtt
gatagggatgaaagagattttgatttccgtagagaagttaatggtgacccttttggaaga
gagagacagtccgaaaactgggcacctccacagcctcagccacatgcttttgagtatttc
ccagaggccacttctgctcagaacagtagcgaccctcaagttaatggagaaaaagcagag
actagcaatcaaaaagaaactgtaagcaaatctgatgatcttgaactctgtgaacagaaa
gagacttcagttaaagagagcgaagagaatgacaccaagaaaactgagacagaaagtcaa
attgtggttgaaagcacagagactgaagggacataa
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