Xenopus tropicalis (tropical clawed frog): 100124722
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Entry
100124722 CDS
T01011
Symbol
pcdh1
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100124722 (pcdh1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xtr01009
]
100124722 (pcdh1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xtr04515
]
100124722 (pcdh1)
Protein phosphatases and associated proteins [BR:
xtr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100124722 (pcdh1)
Cell adhesion molecules [BR:
xtr04515
]
Cadherins
Protocadherins
100124722 (pcdh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
Mid2
TMEM154
Fibulin_C
EphA2_TM
DUF6377
He_PIG
Motif
Other DBs
NCBI-GeneID:
100124722
NCBI-ProteinID:
NP_001096175
Xenbase:
XB-GENE-983603
UniProt:
A4II80
LinkDB
All DBs
Position
3:29996128..30121522
Genome browser
AA seq
1047 aa
AA seq
DB search
MQSRERSRGAGWGKAMQSRERSRGAGWGKAAGGCRDRPNSLKLAMKRTATACFLWLFFQL
PILGSSTKVAYRVPEEQPPNILIGSLASDYGYPDSKHLYKLELGHPYLRVDGKTGDIYTT
ETSIDRESLRECQNLEPGEKCFLEFEVSMTDLMSPVPRLLDGQIEIMDINDNTPNFNSPV
ITLSIPENTNIGMLFPIPAATDRDSGVNGVSSYELIVGPEAQDLFGLQVAEDQDEKQPQL
IVMGMLDREQRDSYDLTIKVQDGGTPARASSALLRISILDTNDNAPKFEKMAYEAELPEN
SPMGHSVLQVKANDSDQGVNAEIDYSFHQASDTVRRLLHLDRSTGLITVQGPIDREDVGT
LKFSVVAKDKGANPKTARTQVTITIRDTNDNKPVIEIRGFGLVTHQGGVANISEDVPVET
PVALVQVSDIDEGVNAAVTCVVAGDVPFQLKQVSDTGSDSKKKYFLQTTTALDYESVKEY
TIEIVAVDSGNPPLSSTNSLKVQVTDVNDNAPVFSQSLMEVVFPENNDINDLVMEVSATD
ADSGPNSQLHYSILPDPSARGIFSINPDSGQIRVNTVLDREQREHYDFHVVAVDKGIPSL
KGTASVVITVLDRNDNDPKFMLNGYNFSVMENMPRLSPVGMVTVIDADKGENAHIHLSVE
PESGEFVIQNGTGTILSSISFDREHQSTYTFRLKAVDGGDPPRSSYVGVTINVLDENDNA
PVIVVPSNISYKYLTPQTHPGTPVNWVRAEDMDTGINAELDYSIASGNPFELFQISHNNG
EVTLEKAIIRKHYGLHRLVVKVTDKGKPSRHGTALVHFYINETLTNQTLVETLLGHSQFT
PLDIDIAGDPEYELSKQRSNIIFGVITGIVAVILVIVVVVVARYCRQKEAKSGYQAGKKE
TKDLYAPKQGNKNNKIKNKVKKSKSPKPPKPVEEDEETGLQKSLKFNLMSDSVGDSPRIH
LPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTG
SDQYSDYSYRTNTQKYNHKQISDHCLM
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgcagagccgggagagaagcaggggagccggctgggggaaagcaatgcagagccgggag
agaagcaggggagccggctgggggaaagcagctgggggctgccgagaccggccaaactca
ctgaagttagcaatgaagcggacagccactgcgtgcttcttatggcttttctttcaactt
cccatacttggatcttccaccaaggtggcatacagggtgccggaagagcagccacctaac
attttgattggtagcttagcttcggactatggctatcctgactcaaaacacctgtacaaa
ttggagttggggcacccttacttgcgtgtggatggtaagactggcgatatctacacaaca
gagacttccattgatagagagagtctgcgggagtgccaaaaccttgaaccaggggaaaag
tgctttttggagtttgaagtgtctatgacagacctaatgtctccagttcccagacttctt
gatggacaaattgagatcatggacataaacgacaacactcctaactttaattccccagtc
atcactctgtccattccggaaaacaccaatatcggcatgcttttccccatccctgctgct
acagatcgggactctggagtaaacggcgtgtcttcatatgagcttattgtggggcctgag
gctcaagacctttttgggctgcaagtggctgaggaccaagatgaaaaacaacctcagctc
attgtaatgggaatgctagaccgcgagcagagagactcttatgacctcactataaaggtg
caagatggtggtaccccagctagggctagtagcgctctgttgcgaatatccattcttgat
acaaatgataatgctccaaagtttgagaaaatggcttatgaggcagagttgcctgagaac
agcccgatgggacactctgtgctccaggtgaaagccaatgattctgaccaaggagttaat
gcagagattgattactccttccaccaagcctcagatacagtccggcggcttctgcatttg
gacagatccacaggtctgataacagtccagggtcctattgaccgagaagatgtaggtact
ctgaaattctcggtggttgcaaaggataaaggagccaatcccaagactgcccgcacccag
gtgacaattacaattcgagacacaaatgacaacaaaccagtgatagaaatcagaggattt
ggccttgttacgcaccaaggtggagtagctaacatttccgaagatgttccagtggagaca
ccggtggctttggtgcaagtctctgatatagatgagggggtaaatgctgctgtgacttgt
gtggtggctggagatgtcccattccaactgaaacaagttagtgatacaggcagcgatagc
aagaaaaaatacttcctacaaaccaccacggcgctggactatgaatctgtgaaagagtac
acaattgaaatcgtggctgtggactcgggcaaccctcccctttccagcacaaactctctt
aaggtgcaagtgactgatgtgaatgataatgcgcctgtctttagtcaaagtttgatggag
gtggtatttcctgaaaacaatgatattaatgatttagtgatggaagtaagtgcaactgat
gcagacagtggtcccaactctcagcttcattactcaattctaccagacccatctgctagg
ggcattttttcaataaacccagactctggtcagattcgagtcaacacggtattggatcgg
gaacagagggaacattatgattttcatgtagttgctgtagataagggaatcccaagtcta
aaaggaacagcctctgttgtcatcactgtattggatcgtaatgataatgaccccaagttt
atgctaaatggctacaatttctcggtaatggagaatatgccacgattaagccctgtgggc
atggtaactgtcattgatgcagataaaggggaaaatgctcatatccacctttctgtggaa
ccagagagtggagagtttgtcatccagaacgggacaggcactatcctctccagcatctcc
tttgaccgggagcatcagagcacctacaccttccggttgaaggcggtggacggaggggac
ccgccccgttcctcctatgttggggtgaccataaatgtccttgatgaaaatgataatgcc
ccagtgattgttgttccatctaacatttcctacaagtatctcacccctcaaacgcatcca
ggtacaccggtcaattgggtgagagcagaagacatggatacaggcataaatgcagaactc
gattacagcattgctagcggtaatccctttgaactttttcaaatctctcataataatggt
gaggtaaccctggaaaaagcgataataagaaagcattatggccttcaccgcctagttgta
aaagtaactgataaagggaagccttccagacatggcacagccttagttcacttctatatc
aatgagacattgacaaatcagactttagttgaaactttacttggtcacagccagttcacc
ccattagacatagacattgctggagacccagagtatgagctaagcaagcaacggagcaac
ataatatttggtgtaattactggtattgttgcagtaattttagtcattgtggtagttgtt
gtggcacgatattgtcggcaaaaagaagccaagagtggctatcaagctggaaaaaaggag
acaaaagacttgtatgctccaaagcagggcaataaaaacaacaaaatcaaaaacaaagtc
aagaagagcaagtctccaaagccacccaagccagttgaagaagatgaggaaactggtttg
cagaagtcccttaaatttaacctgatgagtgactctgttggagacagcccgcgtattcac
cttcctttgaattaccccccaggcagccctgacttgggccgtcactatcgttcaaactcc
cctctgccatcaattcagctgcaaccacagtccccatctgcctccaagaagcaccaggtg
gtgcaggatcttccagccactaacacttttgttggcactggggacaacaattccactggc
tctgatcagtactcggattacagctaccggaccaacacccagaaatacaaccacaagcag
atctcagaccactgcctgatgtag
DBGET
integrated database retrieval system
