Xenopus tropicalis (tropical clawed frog): 100124805
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Entry
100124805 CDS
T01011
Symbol
zc3h13
Name
(RefSeq) zinc finger CCCH domain-containing protein 13 isoform X1
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100124805 (zc3h13)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
100124805 (zc3h13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_4
zf-CCCH_DUS3L
zf-CCCH_2
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
100124805
NCBI-ProteinID:
XP_031752992
Xenbase:
XB-GENE-5798641
UniProt:
A0A8J1J546
LinkDB
All DBs
Position
2:complement(134292404..134324800)
Genome browser
AA seq
1675 aa
AA seq
DB search
MSKIRRKVTVENTKTISDSTSRRPSVFERLGPSAGNSAETQCRNWMKTGNCIYGNTCRFI
HGPSPRGKGYSSTYRRSPERPPGDLRERMKNKRQEVDSESQKRTTEESTSPSRKESSRGR
HRDKEDIKITKERTPESDEETAEWETTRDDSDNGDVNYDYDHELSLEKKRQKIQRELMKL
EQENMEKREEIVIKKEISPEVIPKMSPSPRKSSRSPKRKSSPKPTNVSSKKEKKAVTSSP
PAPDQQTRHSKSAQSKKKGPRTPSPPPPTQEEALFSKKHKEKHKTKDRIDEKVKDVKERG
RDVEKPRDKKEKQRDASGGSHRQKRSPSPADRSCSNSSHSRDYSPPAPRRRHPSSPVLTK
SSAHKHAVSPSHRSVSPSGRHHSPMSSRHHSPSSQSGSSVQRHSPSPRHRRSPSPSYQRT
ASPTTRRQSTSPYATRASSSPHRKRSPSKHRSPAREKGRHDRERTSASQDRRHERRDESR
GRKDKDRERDERDRDHDREPSGSRDHRDDRESREGRDRREVRDNRDRREPRDSRDSRETR
DSREYRDVKESRDQKDSRSTRDAHEYRDRDNRESHRKDEQYDERSYRNHGRDDTSRAESR
NETRNDSRNENRSDTRNDRNGRTRGRAPDPPEKAGRAARSSQADNHSSSSNYHDNWESRS
SYTERDRYDSRDQGRDSSFDRRHGDRDRRDRDRDQRPTSPVRHQGRSDDTEREERREERR
VDRTDERRDERARERERDREREREREQREREREKERESERERVREREREREREKDRERER
EKEREREREERERERERERERERERERDRDREREREREREREKDRERGRERERDRPRDWE
EKEKTREDRRDKREDVREEKRETHEDRKPKSEKGKIEGQINQNLHKDQRKRHRNESSPSP
RQSPKRRREHSPDSDAYNSGDDKNEKHRLLSQVVKPLDTRSLSPAHVNEERQSRWKEEER
KSERKESSRRYEESETKERAVPAAEKQREHLAEPSENSKVKDLDTVVQHKAEERDISEKL
HDDKTKKTKLQKKAAKKKKEDEVGTEKSTTESQSDDVQVFSPKKGQKKKSVEKKRKKSKG
DSDVSDEEVVQPSKKKKGPRTPPATVAPVSVAAPIKEEVVEVLPEKKVVEKKVVEVSQEK
ETAFSDWSDEDVPERKEPVPLEKSIEEPIKKPSKVKVEKEEPRPAAAEEPPPRKPTEQKR
SSSISSNQSRTSSRLRSPSIDSVHRSGEDHNARRRLLHGSSRDRDRNKSIEPTGERKSRI
DQLKRGEPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRERASERERYEYERER
DKDRERERRVGRQREWDREADKEWPRTRDRDRIRERERERDRRSDIDREREKVLPDSTEK
ERVRLLDMPPIAEPKRTDLKERDLDKNYDNSSRNISAVDKIDRNPENSQDISNSRKTEKP
ESFDGGDDEEPKLEDDQSGDSVAGEEYEPISDDELDEILADDAEKKEDHQQDDDKPSDPL
DVIDVDWSSLMPKQPKEPRESGAALLKFTPAALLLRVGISKRLAGPELFNKVKDLCQQSL
EKPKDTETLFEHDLGALNMAALLRKQERAGLLSNLGPCCKALCSRRDLAIRKQLVQNEKG
TVKQTYSNPPVVDSELLRLSLRLFKRKPSNLVLNQEKSDECKVSDSGKKPEPCIC
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaatccgacggaaggtcacagtagagaataccaagactatatcggatagcaca
tcgcgcagaccaagtgtttttgagagacttggacctagcgcagggaatagtgctgagact
caatgtcgtaattggatgaagactgggaactgtatatatggtaatacctgtagattcatt
catggcccttcaccaagaggcaaaggttatagtagcacatatagaaggtcaccagaaagg
ccaccaggagatttgcgggaaagaatgaaaaataagcgtcaggaagtagattctgagtct
caaaaacgaactactgaggaatccacatccccatcaaggaaggagtcttcccgtggtagg
catcgtgataaggaagatattaaaattactaaagagagaacccctgaaagtgacgaggag
acagctgaatgggaaactacaagggatgattcagacaatggtgatgttaactatgattat
gaccacgagttatcactggaaaagaagcgtcagaaaattcagagagaattaatgaaactg
gaacaggagaacatggaaaagcgtgaagaaattgtcattaaaaaagagatatctcctgaa
gtaataccaaaaatgtcaccttcaccaagaaagtcaagccgatctcccaagcgaaaatcc
agtcccaagcctaccaacgtgtctagcaagaaagaaaagaaggcagttactagttctcct
ccagctcctgatcaacaaacaaggcattcaaaaagtgctcaaagcaaaaagaaaggtcct
cgtacaccaagtccgcctccaccaacccaagaggaagccctgttttctaaaaagcacaag
gaaaaacataaaacaaaagatcgcattgatgaaaaggttaaagatgtaaaggaaagagga
cgtgatgtggagaaacctagagacaaaaaagaaaagcaaagagatgcttctggggggtct
catagacaaaaacgatccccaagtccggctgatcgatcatgtagcaactcatcccattcg
agggactactctcctcccgcgcctcggaggcgacatccttcatctccagtacttacaaag
tcttcagcccataagcatgcagtatccccatctcaccgatctgtttctccttctgggcgc
catcattctcccatgtcttccaggcaccattctccttcctcacagtcagggtcttctgtg
caaagacattctccttcacctcgccataggaggtcaccttctccttcctaccaaagaact
gcatccccaacaactaggcgccaatccacatctccatacgctacacgtgcatcctcgtct
ccacatagaaagaggagcccatccaagcatcgttccccagctagagagaaggggagacat
gatagggagaggacatctgcttcacaggacagaaggcacgaaaggagagatgagagcaga
ggaagaaaagataaagatagagaaagagatgagagagatagagatcacgacagggaacca
agtggctctagagatcacagagatgacagagaatctcgtgagggtcgtgaccgtagggaa
gtcagagacaaccgtgatcgtagggaacctagagactcgcgagatagtcgggagactagg
gattctcgagaatatagagatgtcaaagaaagccgtgaccagaaggattcacgttcaact
cgtgatgctcatgaatacagagatagagacaatagagaatcccatcgaaaagatgagcag
tatgatgaacgtagctacagaaatcatggcagagacgatacttcccgtgctgaaagcaga
aacgaaacaaggaatgattccaggaatgaaaatagaagtgacactcgtaatgaccgcaat
ggtcgaacaagaggacgagctccagatccacctgaaaaagcaggcagagcagctagaagc
tcccaggcagataatcacagcagcagcagcaactaccatgacaactgggagtcgagaagt
agttacacagaaagagatcgatacgacagtcgtgatcaaggacgcgactcttcttttgat
cgaagacatggagaccgggatcgacgggacagagacagagatcaaagaccaacttcacca
gttagacaccagggaaggagtgatgatacagaaagagaagaaagaagagaagagcgtagg
gtggacagaacagatgaaagaagagatgaaagagctagagagcgtgagcgtgacagggag
agagaaagggaaagggaacaaagagaaagagagagagaaaaagaaagggaatctgagagg
gagcgagttcgtgagagagaaagagaaagggagcgagaaaaggacagagagagagagcgt
gaaaaggagcgggagagagaaagagaggagcgggagagagaaagggaacgtgaaagggag
cgtgaaagggagcgtgagcgggacagagatcgagagagagaacgggagagagaaagagag
cgggaaaaagatagagaaagaggcagggaaagagagagagatcgtcctagggactgggag
gaaaaagaaaaaacaagagaagaccgaagggataaaagagaagatgtgcgggaagagaaa
agagagacgcatgaagatagaaagcctaagtcggagaagggcaaaatagaagggcaaata
aatcaaaacctacacaaagaccaacgaaagcgacacaggaatgaaagcagcccaagccca
cgccagtcccccaagcgtcgccgagaacactcccctgatagtgatgcttacaacagtgga
gatgataaaaatgaaaagcacagacttctgagccaagtggttaaacccctagatacccgt
tctctaagtcctgctcatgttaatgaagaaagacaatcacgctggaaagaagaggaacgc
aaatcagaaagaaaggagagctcaaggcgctatgaagagtcagaaactaaagagagagca
gttcctgcagcagaaaagcagagggaacatttagcagaacctagtgaaaattctaaagtt
aaagatctggacactgttgttcagcacaaagcagaggaaagggatatttccgaaaagcta
cacgacgacaaaacaaagaaaacaaaattgcaaaagaaagctgcaaaaaagaaaaaagag
gatgaggttggaacagaaaaaagcacaacagagtctcagtctgatgatgttcaagtcttt
tcacctaagaaaggacagaaaaagaagagtgttgagaaaaaacgtaagaaatccaagggt
gactctgatgtttctgatgaggaagttgttcagcctagcaaaaagaaaaaaggacctaga
acaccacccgctacagttgctccagtttcggtagcagcacccataaaggaagaagtcgtt
gaagtgttgcctgagaaaaaagtggtagagaaaaaagtggtagaagtttctcaagaaaaa
gagaccgcatttagtgactggtcagatgaagatgttccagaaagaaaagaacctgttcct
ttagagaaaagcatagaggaacctatcaaaaagccttctaaagtcaaagtagaaaaagag
gaacctcgacctgcagccgccgaagaacctcctcctcgtaaacccacagagcaaaaacgt
agcagcagcatatccagcaaccagagccgcacatccagccgccttcggtcaccatccatt
gattctgttcatcgaagtggagaagaccataatgcaagaaggagattattgcatggtagc
tctagagatcgtgacagaaataaaagcattgagcccaccggggaacgcaagtccaggata
gatcagctgaaacgtggagagcctagccgcagcacttcatcagatcgtcaggattcaaga
agtcacagttccagaagaagttcccctgaatcagatcgtcaggtgcattccagatctggg
tcatttgacagccgggaaagagcttccgaaagagagcgttacgaatatgagagagagcgt
gacaaggacagagagagagaaaggagagttggaagacagagggagtgggatcgggaagct
gataaagaatggccaagaacccgagaccgtgacaggataagagaaagagagcgtgaaaga
gacaggaggagtgacattgatagggaacgtgagaaagttcttcctgacagtacagagaaa
gaacgagtacgccttcttgatatgccacccattgctgagccaaaacgtactgatctaaag
gaaagggacctggacaaaaattatgataatagcagccgaaatatttcagctgtggataaa
atagaccgaaaccctgaaaactcgcaggatatcagcaatagccgtaaaactgaaaagcca
gagagctttgatggtggagatgatgaggagcccaagttagaagatgaccagtcaggggac
tctgtagctggagaagaatatgagccaattagtgatgatgaactggatgagatcttggcc
gatgatgcagaaaagaaagaagatcatcaacaagacgacgacaagccatcagatcctttg
gacgttattgatgtggactggtccagtttgatgccaaaacagcctaaggaacctcgggag
tctggtgctgcactcttgaaattcacgccagcagcattattacttcgtgttggcatttca
aagcgcttggctggacctgaactatttaataaagttaaagacctttgccagcagtctcta
gaaaagccaaaagatacagagaccctgtttgaacatgatctgggagctctaaatatggct
gcactgctgaggaaacaggagagggccggcttgcttagcaatctaggaccctgttgtaaa
gccctgtgttctcggagagacttggctattcgcaagcagcttgttcagaacgagaagggt
acagtgaaacagacttactcgaaccctcctgtagtggacagtgaacttttgaggttaagc
ttgcgcctttttaagcggaaaccttcaaaccttgttttaaaccaagaaaagagcgatgaa
tgcaaagtttctgactctggcaagaagcctgaaccttgcatttgttaa
DBGET
integrated database retrieval system
