Xenopus tropicalis (tropical clawed frog): 100124862
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Entry
100124862 CDS
T01011
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha precursor
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04010
MAPK signaling pathway
xtr04020
Calcium signaling pathway
xtr04144
Endocytosis
xtr04510
Focal adhesion
xtr04540
Gap junction
xtr04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
100124862 (pdgfra)
04020 Calcium signaling pathway
100124862 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
100124862 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
100124862 (pdgfra)
04540 Gap junction
100124862 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
100124862 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
xtr01001
]
100124862 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xtr04090
]
100124862 (pdgfra)
Enzymes [BR:
xtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
100124862 (pdgfra)
Protein kinases [BR:
xtr01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
100124862 (pdgfra)
CD molecules [BR:
xtr04090
]
Proteins
100124862 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
Motif
Other DBs
NCBI-GeneID:
100124862
NCBI-ProteinID:
NP_001096290
Xenbase:
XB-GENE-6072920
UniProt:
A4IHL2
LinkDB
All DBs
Position
1:39990267..40018820
Genome browser
AA seq
1091 aa
AA seq
DB search
MMPTTRASLVLGCLLIIGPWVILAQNPLPSIFPEKDELVQRLHSSFSLTCTGESELSWQH
PHSESELGNVVIGSEENNSGLFVSVLEVTNASASNTGLYTCYYNHTQTEDSEIEGTDIYI
YVPDTNVPFVPPGLFDHIIVVEEDESAFIPCRTTDPSSQVTLKSIENSKTVSAFYDSKQG
FVGNFQPGSYICETVSNKMVYQTDLYILQTWKATHNISVEMEAPQTVFRTGETITISCIV
LENEVVELKWYYPGQQRGVGKRNVEESRVPSQRLVYTLTIANATADDSGEYQCAVLHATL
DNKVIKKTNITVHEKGFINLEPMFGSEEYANLHEVKSFIVDLHAYPCPRVFWLKDNRTLS
ENLTEITTSTVTTKETRFQSKLKLIRAKEEDSGLYTLVAQNDAETKSYSFILQIKVPALI
LELVDEHHGTSGEQTVGCLAKGMPVPDVEWLVCKDIKRCNNDTLWSLLAINGSEISMETH
QDYENTIESQVTFKKVEETMAIRCIARNDLGVVARELKLVAPTLRSELTVAAAVLVLLVI
VIISLIVLVIIWKQKPRYEIRWRVIESISPDGHEYIYVDPMQLPYDSRWEFQRDGLVLGR
ILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGAHLNI
VNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDNFQSRHPEKSKKDLDIFGLNPADEST
RSYVILSFENNGDYMDMKQADTMQYVPMLEMKEPSKYSDIQRSLYDRPASYKKKPLSEVK
NILSDDGFDGFDGLTVLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAHGKIVKICD
FGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSFGILLWEIFSLGGTPY
PGMIVDSTFYNKIKSGYRMAKPDHATHEVYDIMVKCWNSEPEKRPSFRHLSDIVESLLPM
EYKRCYETVLHDFLKSDHPAVTRMRSDSDNSYIGVTYKNENKMKDRESGFDEQRLSADSG
YIIPLPDIDPVSEDESSKRNRHSSQTSEESAIETGSSSSTFIKREDETIEDIEMMDDIGI
DSSDLVEDSFL
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctaccacgagggcatcccttgttttggggtgtctcctgattataggtccgtgg
gtcattcttgctcaaaatcccctgccctcaatatttcctgaaaaggatgagttggttcag
aggttgcactcctccttttcactaacgtgcactggtgagagcgaactgagctggcagcac
ccccattccgaatctgaactggggaatgtagtcattggaagtgaagaaaacaacagcggc
ctctttgtgtctgttctggaagtgaccaacgcttccgcctccaatacgggcctctacacc
tgctactacaatcacacccagactgaggacagtgagattgaaggcactgatatctacatc
tatgtcccagacaccaatgtcccttttgttccccccgggttgtttgaccatatcattgtg
gttgaggaagatgaatctgctttcataccttgtcgcactaccgacccttccagccaagtg
accctaaaaagtatcgaaaattctaagactgtcagtgccttttatgacagcaagcaagga
tttgttggaaacttccaaccaggatcatacatctgtgaaaccgtctctaacaaaatggtc
taccagacagacctttacattctacagacatggaaagcaacgcacaacatttccgttgag
atggaagccccccaaactgtatttcgaactggggaaaccattaccatttcctgcattgtg
ctggagaatgaggtggtagaattgaagtggtactaccctggacaacagagaggcgttggc
aaaagaaatgttgaagaaagcagggttccatctcagagactggtgtacaccttaaccatt
gcaaatgccactgcggatgactcaggagagtaccagtgtgccgttctacatgcaacacta
gataacaaggtcatcaagaagacaaatataacagttcatgaaaagggattcatcaatctg
gagcccatgtttggatctgaggaatatgccaacctccatgaagtgaagagctttatagta
gacttgcatgcctatccctgccctagggtcttctggttgaaggacaaccggacactgagt
gaaaatctgacagagatcacgactagcactgttacaactaaagaaaccaggtttcagagt
aaacttaaactgatccgggccaaagaagaagacagcggactgtacactcttgtggcacaa
aatgacgcagaaactaaaagctactcgtttattttgcagataaaagtacccgctttgata
ttggaactggttgatgaacatcatgggacatctggtgaacagactgttgggtgcttagcc
aaagggatgccggtccctgatgtggaatggttggtctgcaaagacatcaaaagatgcaac
aatgacaccttgtggtcccttctggcaataaatgggtcagaaatcagtatggagacccat
caagattatgagaacacaatagaaagccaggtgacctttaagaaagttgaggagacaatg
gcaatccgatgtatcgcaagaaacgacctcggtgtggtggccagggaactaaagctggtt
gcacccaccctacgttctgaactaactgtggcagccgccgtccttgtccttctggtgatt
gtcatcatatctctcattgtactggtcatcatatggaaacagaaaccaaggtatgaaata
agatggcgagtgatcgagtccatcagcccagatggccatgaatatatctatgtggaccca
atgcagcttccttatgactctcggtgggagttccaaagggatggacttgttcttggtcgc
atccttggctctggggcttttgggaaagtggttgaaggcacagcatatgggttaagtcgt
tctcagccagttatgaaagttgctgtaaaaatgttgaaacctactgcccggtcaagcgaa
aagcaggcactgatgtctgaactgaagatcatgacacaccttggcgcacatctcaatata
gtcaatttattaggagcctgtactaagtcaggaccaatttatatcataactgaatactgc
ttctatggtgacctcgtgaattacctgcataagaaccgagataattttcagagccgacac
ccagagaaatcaaagaaggatttggacatctttgggctgaacccagctgacgagagtacg
agaagctatgttatcttatcatttgaaaacaacggcgactatatggacatgaaacaagct
gacaccatgcagtatgtacccatgctggaaatgaaagaaccctccaagtattcagatatc
cagagatccttgtatgaccggcctgcgtcgtacaagaagaagcctttgtcagaagtgaaa
aatatcttgtctgatgatggattcgatggattcgatggtctaacagtactggacttgctc
agtttcacatatcaagttgcaaggggcatggaattcttagcctctaaaaattgtgtacat
cgggatttggcagctcggaatgtcctattagcacatgggaaaattgtaaaaatctgtgac
tttggcctagcaagagacatcatgcacgactccaactatgtatccaaaggcagcactttc
cttccagtaaagtggatggcgcccgaaagcatcttcgataacctgtacacaactctcagc
gatgtgtggtcatttggaatcctgctgtgggaaatattttctcttgggggcacaccgtat
cctggcatgattgtggattcaaccttctataataagataaaaagtggctacagaatggca
aaacctgaccatgccacccatgaagtgtacgacatcatggtaaaatgttggaacagtgaa
ccagaaaaaaggccatcatttcgccatctgagtgacattgtggaaagtctacttcctatg
gaatacaaaaggtgctacgagacagttcttcatgatttccttaaaagtgaccaccctgca
gttactcgcatgagaagtgacagtgacaattcctacattggggtgacgtataagaatgaa
aacaaaatgaaggacagagagagtgggtttgatgagcaaaggctgagcgctgacagcggt
tacattattccccttcctgatattgatcccgtttcagaagatgagtccagcaagaggaac
aggcacagttctcaaacatcagaagaaagtgcaatcgagaccgggtccagcagttccact
tttataaagagggaggacgagaccattgaagacattgagatgatggacgacattgggatc
gattcctcggatctagtggaggacagtttcctgtaa
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