Xenopus tropicalis (tropical clawed frog): 100124989
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Entry
100124989 CDS
T01011
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xtr03009
]
100124989 (utp20)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
100124989 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
DUF6308
Motif
Other DBs
NCBI-GeneID:
100124989
NCBI-ProteinID:
XP_031754717
Xenbase:
XB-GENE-954473
UniProt:
A0A6I8PVM6
LinkDB
All DBs
Position
3:48737132..48806598
Genome browser
AA seq
2779 aa
AA seq
DB search
MKTKSSRHKSENTYKFQTFSERLANVNIDIIHRIDRTESHSEVVETYFFEALQKWKELNL
TENYVTFYKEVSSKCQSFNLLVYHQNDIVQSLKTHLQVKNSLAYQPLLDLVVQLARDLQI
DFYPHFQEFFLAVSSILETKDTDLLEWAFTCLSYLYKYLWRMMVKDMPAIYSLYSTLLAH
QKPHIRNFAAESFAFLMRKVPDLNELLNFMFLDLKEHPQKAQGLGQLLFEMCKGVRNMFH
SSALKAIKLILQKLGPVTETEEELPWSLVGETLKHFVESATHYINTEHFNPLITNIQETL
LALSKKIGSNPSECSDQIERLLQAYSVLLAHGHGSKVPKPETDCQTLTEMMNTQNMSLSC
CGNLLKITSTLLLNDNISLPACDIEHTISKVFQSGFARSLILEFSEDMFRMKQFEQHFLQ
SFLQYILLLFKEDDSQVKDEALVILAKLILSKAEPPSTASMAFEKYPLAFGVKSLNKSKC
AEGEPSTVLSYVLSLVQLSEGQDITNLPQCWAALIVLPHLRPLEKDNILPLLKTFIEKLF
VLTDQIQQKQGILFVLCQAVSTLLSLDDSSEILSIVPVENVKCLLLTFPSDPSVLLLADL
YFTRLVFCGHQNRLSHNTMVEIFTKLQNNISTNSSKVRLLTIRILNNFDAPLTSALEEMQ
REGSQSLFSILLQAELVPATVHEYREKLLHLRKLRHDLVKTVAKGDLQEVPLRYLLAMLY
INFSPLWDPVVELIVSHANEMENKSFWKVFCEHLEESATRAEKELKEENEPEEEISVTYG
PESKSSSGGHIGALYNESIKRRTNINDRTDFTNFRFLLWKAMSMFPDRVEPRSRELSPLL
LRFISNEYYPADLLIAPSQDLRKKHLEKVKSEDDVIMKENETIEEEEDVELNEVKDSGPQ
KKKTRRAASKQLIAHLKVFSKFSNPRALYLEQKLYDLYTQLLCHQDQEVQKITLECVMSY
KHPHLLPYKENLLRLLDDKSFKDEIVHFSISEENSIVKSFHRPDVMSVLMRILYGRMRSK
TGSKTQGKSAAGTRMSIVLRFLAGSLPEEIRMFLDLLFEPIKHLKDGHCLASVVQTVESL
DLAKVLPLGRQHSLLSSLEVVLKHLGHLISLYLPEMLQILLCMTASVSYVLEQREKIQLK
FINPLKNLRRLGVKRIAEFFTDFETYNFSSDEIDAIFHAVVWPQISRLAAESQYSPTLLL
KLIHVWSSNSRFFLLLGKQRPGHPEYDILLNVFALLSTKNLSEATASLVIDVADNLLNST
DFEAAENLPCLLVNDCVLSDVENINDESPTVGVRLIYPHISAILQYLNKSMLNVDKMRKK
KFSAQVSKELNILSKISKFIQEKEQSTVLIGLLISYLHKSNIAQDTEVDILQTIQNLLRH
CTNPAIFLKPMAKLFAVIQNKLSRQTLCLTFQVLSELDPSMEYITDVAAKLNAFDKRHLD
DIHFDVRIPAFQKATAHIKEMKSLDMNYIIPLMYNCFHTIQIGEMSLSDNASLCLTAIIT
QLAAVEHEEIEFREIVQRTLLQSVKTGLRSKVEHIQQDYTTLLSNLIRTFPKHPEFADLV
QLTDYNDPEMDFFENMKHIQIHRRARALRKLAKKLVEENVLLSSKSLQNYIMPYATTTLF
DEKMQKYENMINASVEMVGAVCKHLSWSAYMYHMKYFIHVLQTGQISQKLGVGLLVMVLD
AFHFDHNTMEKHLQAVETEESKMDTDQLEEEEEEPMDLQEEEEENLEISNVDSEKAANVI
SENLDEEHKKSQKPNIALKSLPKNKEELASLIQHIQETVKTTIIPKLKKCLDAKVKRDEE
HKSVKSKAVNEEEVVRVPIAFAMVKLMQTLPQEVMESNLPSILLKLCVFLRNRAQEIRDV
ARNTLIKIMETIGARYLHYVLKEMQSVLVKGYQVHVLTFTVSLLLKGLTGSLKNGDLDGC
LETLVQIFNQELFGNIAEEKEVKGIVSKVMEARRSKSYDSYELLAQFVGKDQVVKLILPL
KEVLEVTTSLKVSRKVHEAFRRIVFGLIANTGMTAQPVLLLSYGLISENLPLITEKEKNS
RSEMLPPDQRLQPKSCLLIETPIPRGGLKAAVNSKTNLHILVETGLRLLHMSLKKSKVNS
SDEHTLEMLDPFVLILIGCLQSMDVKVITGALQSFIWILKFPLPSLKTNTVELIKQLFLL
LKDYAKAGVAKGQNFHLVVNCFKCVTILVKHTKGEITEKQLQVLLGYAEEDLYDSSRQAT
AFGLLKAIVSRKVIVPEIDEVMQKVAKLAVTGQSEQVRVQCRQIYLKYLLDYPLGVKLKT
NLEFIIAQLNYEYETGRESALEMMAYLFQAFPESILNQFCGLLFVPIVLLMVNDDSPKCK
KMAALAGKSLLSKINLQKKDLMFSLVTQWLSNEKSAHKRLGAQTCGLFVEAEGVEFERRL
EPVLTTIEKEINPVMFEDLKEETEEKAADRLLFSFLTLITKLIKECNVTQLSKCQEIMVV
ILAHVQSHLWYPHSWVWLTSSQIFGLLFALQKPEDLVSKWMNKKPGKKATQEALSCSFLV
EHLDVKMKDLALAFCHQLQSKFLDQALGEQIIKNLLFVAKVIYLLAPGVEPTQTSNGEMD
SETNKDAVSGEEDDDAGDEEAKKDKEDEKKATLLWLMKRLTILAKREAAYTPKNPLKRTC
IFKFLGACAVDLGKERLKPFLLTILTPLFRELSSTYSEQDPTLKNLAQEIIDLLKSLIGL
EEFSLAFASVQKQATQKRVMRKKQKALQAVANPEVAAKKKLKKHKNKIEAKKRKIEFLRP
GYKAKRSRSHTLKDLAMVE
NT seq
8340 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaaaatcatctcgtcacaagtctgagaacacttataagttccagacattttca
gaaagattagcaaatgttaacattgatattatccatcgtattgacagaacagagagtcat
tctgaggtggttgagacctacttttttgaagcattacagaaatggaaggaactaaatctc
actgaaaattatgtaacattctacaaagaggtatcttccaaatgtcagtctttcaacctt
ctggtatatcaccagaatgatatagttcaaagcttgaagactcatctgcaggtgaagaac
agccttgcttatcaaccccttctcgacctcgtggtacagctggctagagatctccagatt
gacttctatccccactttcaagagtttttcctagctgtctcttctatactggaaaccaaa
gacactgatttattagaatgggcctttacttgcctgtcgtatctctacaaatatctatgg
aggatgatggtaaaggatatgccagctatatacagtctgtacagcactcttttggcccat
cagaagccacacatcagaaactttgcagcagagagctttgcatttttaatgaggaaggtg
cctgatctaaacgagctattaaatttcatgtttttggatcttaaagagcaccctcaaaag
gcacaaggcctggggcagttactgtttgagatgtgtaaaggggttagaaacatgtttcac
tcctcagccctaaaggccataaaactaatactacaaaagcttggacctgtcactgaaact
gaggaggagttgccatggagtctggttggggaaactttgaaacattttgtggagtctgca
acacattatatcaacacagagcattttaatccactaattaccaatattcaggagaccctt
ttagcactttcaaagaaaatagggtcaaatccatctgaatgttcagatcaaattgaaagg
ttgctgcaggcgtattctgtgcttttggcgcatggtcacggatctaaggtcccaaaacca
gaaactgactgccagactttaacagaaatgatgaacactcaaaatatgtcattgtcatgt
tgtggtaaccttttgaagataacttctactttacttttaaatgacaacatttcactgcct
gcctgtgatatagaacacaccatcagtaaggtctttcaaagtggatttgcaagaagttta
attctggagttttctgaagatatgttccgtatgaagcaatttgagcagcattttttacaa
agcttcctacagtacattctgttactttttaaagaagacgacagtcaagtaaaggatgag
gccttggtgatactggcaaagcttatcttatcaaaagctgaacctccttctacagcatca
atggcatttgagaaatatccccttgcttttggtgtgaaatccctaaacaagtctaaatgt
gctgaaggggagccttcaacagtgctaagctatgtactctccttggttcagttatcagag
ggacaagatatcaccaaccttccccagtgttgggctgcacttattgttctgcctcattta
aggccactggaaaaagacaacattctgccacttttaaagacttttattgaaaagcttttt
gttttaacggatcaaatacaacagaagcaaggaatcctatttgtactttgccaagctgta
agcacactactcagtttggatgactcttcagaaattctttctattgttccagtagagaat
gtgaagtgccttttgctgactttcccctctgatccaagcgtcttgctcttggctgatctg
tactttactagattagtattttgtggccaccagaatcgactgtcacacaacaccatggtg
gagatctttaccaaactgcaaaataacatttcaacaaactcctcaaaggtgcgcctttta
acgataaggattttaaataattttgatgctcctctcacttctgctcttgaggaaatgcag
agagaggggagtcagtcactgttttcaatcctgttgcaagctgaacttgtaccagcaact
gttcatgaatacagagagaaacttcttcatctcagaaaactgaggcatgatctggtgaaa
actgtagcaaaaggagacttgcaggaggtacctctacggtatttactggcaatgctgtat
atcaatttcagtccgctctgggatccagttgttgagcttattgtttcccatgcaaatgaa
atggaaaataaatctttttggaaagtattttgtgagcatttggaggagtctgctacccgt
gctgagaaagaattgaaagaagaaaatgaaccggaggaagagatatcagtcacttatggc
ccagaatccaagtctagctctggaggacacattggagcactatataacgaatctattaaa
cgcagaactaacattaatgacagaactgattttaccaatttccggtttcttttgtggaaa
gcaatgtccatgttccctgacagggtggaaccaagatctagggaactgtcaccccttctg
ttgaggtttattagcaatgaatattatccagcagatttattaattgctccttctcaggac
cttagaaaaaagcatctagaaaaggtaaagtctgaagatgatgttatcatgaaagagaat
gagactatagaggaggaggaggatgtagaattaaatgaagtcaaagattctgggccgcag
aaaaagaaaacaaggagagcagcctcaaagcagctaattgctcacttgaaagtgttttcc
aagttttccaatccgcgtgccttgtacctggaacaaaaattatatgacctctacacacag
ctactatgtcatcaagatcaggaagtacagaagatcacccttgagtgtgtgatgagctat
aagcatccccatcttctcccttacaaagaaaacctgctaaggctgttggatgataaaagc
tttaaggatgaaattgtccatttcagcatatctgaagagaattcaatagtaaaatccttc
caccgaccagatgtaatgtcagttctcatgagaatcctttatggccgcatgagaagtaaa
actggcagtaaaacacagggcaagtcggcagcaggaacccgcatgtctattgtgttaagg
ttcctggctgggtcactgcctgaggagatcaggatgttcctggatctcctatttgagccc
ataaaacatttgaaagatggtcattgccttgcatcagtagtacaaactgttgaaagtctg
gatctcgctaaagttcttcctcttgggcgccagcacagtctgcttagtagtttggaggtg
gttttgaaacatctcggacacctgattagcctctacttacctgaaatgctacagatatta
ctgtgcatgactgcttccgtctcttacgttctcgagcaaagagaaaagatacagctaaaa
ttcatcaacccattaaagaacttgagacgtcttggggttaaacgcattgctgaatttttt
acggattttgagacgtataatttctcttcagatgagattgacgctatatttcatgcagtt
gtatggccacagattagcagacttgctgctgaaagtcagtattccccaacccttttactg
aaacttatccatgtttggagcagtaacagcaggtttttcctgttgcttggaaaacaaagg
cctgggcatcctgaatatgatatacttctaaatgtgtttgcacttctctcaacaaagaac
ttatcagaggctactgcaagtctggttatagatgtggctgacaatcttcttaacagcacg
gattttgaagctgcagagaatcttccctgcttgttggtgaatgattgtgttctctctgat
gttgaaaacataaatgatgaatctcccactgtgggtgtaaggttgatatacccgcacatc
tctgcaatcctgcagtacctcaataagagtatgctgaatgtggacaaaatgaggaaaaag
aaatttagtgcacaagtgagcaaagaactaaacatcctgtcaaagatcagcaagtttatt
caggaaaaagaacaaagtactgtgcttattgggctccttatttcctacttgcataaaagc
aatatagctcaggatacagaggtggatattctgcaaacaattcagaatctgttaagacac
tgtacaaaccctgcaatctttctgaagccaatggcaaaactttttgcagttattcagaac
aaattatcccgccagactctgtgtttaacatttcaggttttgtcagaactggatccctca
atggaatatatcacagatgtggctgctaagctgaatgcatttgacaagagacatttagat
gacattcactttgatgtgcggataccagctttccaaaaagccactgcccatataaaggag
atgaagtcactcgacatgaactatatcattccccttatgtacaactgcttccatactata
cagattggagaaatgtctctgagtgacaatgccagcctgtgccttactgccataataaca
cagcttgcagcagtggaacacgaagagattgaattcagagagatagtgcagcgcactttg
ctgcagagtgtgaaaacagggctgagaagcaaagtggagcatattcagcaggactacaca
acgttgctttctaacttgatccggacctttcccaaacatccagagtttgcagatttggtt
caacttacagattacaatgaccccgaaatggacttctttgaaaacatgaaacacattcag
attcacaggagagcaagggctttgcgaaaattagcaaagaaacttgtggaggagaatgtg
cttttatcctctaaatccctccagaactacatcatgccatatgccaccacaactctcttt
gacgaaaagatgcaaaagtatgaaaatatgatcaatgcatctgtggagatggtaggcgca
gtgtgcaaacatctgtcatggtcggcatacatgtaccacatgaagtattttattcacgtt
cttcaaactgggcagatcagccagaagctgggtgtcggcttgctagtgatggtgcttgat
gcatttcattttgatcacaatacaatggaaaagcatctgcaagcagtagaaactgaagaa
agtaaaatggacactgaccaactagaagaggaggaggaggaaccaatggatttgcaagaa
gaggaagaggaaaatctggaaatatccaatgtggatagtgaaaaggcagcaaatgtgata
agtgagaatctggatgaagaacacaaaaagagtcaaaagccaaacatagcgctcaagtct
ctaccaaagaacaaggaagaacttgcatcacttatccaacatattcaggagacggtcaag
actactatcataccaaagttgaagaaatgtcttgatgctaaggttaaaagagatgaagag
cacaagtctgtgaaatccaaagcagtgaatgaggaggaagttgttagggttccaattgcc
tttgctatggtaaaactcatgcagactttgccacaagaagtcatggagtctaatttacct
agtatcctgctcaagctctgcgtttttttgagaaacagagcacaggaaatccgtgatgtt
gcccgtaacactttaattaaaatcatggagaccattggtgctcggtacctgcactatgta
cttaaagagatgcaatctgtgcttgtcaaaggataccaggtccatgttctgacctttact
gtcagtctgctgttaaaagggctgactggcagcctaaagaatggagatttagatggctgc
ttggaaacactggtccagattttcaatcaggagttgtttgggaatatcgcagaagaaaaa
gaagttaaaggtattgtttcaaaagtaatggaagcacgaaggagtaaaagctacgactct
tatgaactccttgctcagtttgttggaaaagatcaggtggtgaagcttattctgcccttg
aaagaggttctggaggtgactacaagcctgaaggtgtcacgtaaagtgcatgaagctttc
cgccggattgtttttggtttaatcgccaacacaggaatgactgcccagcctgtcctctta
ctcagctatgggctcattagtgaaaatctcccactaataactgaaaaagagaaaaatagc
cgctcagaaatgcttcctccagatcaacgccttcagcccaagagctgtttgttaattgag
acacctatacctcgtggaggccttaaagcagcagttaacagcaagaccaacctgcacatc
cttgtagagactggactacggctgctgcacatgagtttgaagaaatccaaggtcaattct
tctgatgagcatacattagaaatgctggatccctttgtgctaatcctaattggctgtttg
cagtcaatggatgtaaaggttatcactggagcattgcagtctttcatctggatcctaaag
tttcctttgccttcccttaaaaccaacacagtggaactgatcaaacagctctttctgctg
ctgaaggattacgcaaaagctggagtagccaaagggcagaatttccacttggttgttaac
tgcttcaagtgcgttaccatactggtgaaacacacgaagggtgaaattacagagaagcag
ctgcaagtgttactgggctatgcggaggaagatctgtacgattcatcacgacaggctact
gccttcggcttattaaaggccattgtatcaaggaaggtgattgttcctgagattgacgag
gtgatgcagaaagtagccaagttagcagtgactgggcagagcgaacaagtcagagtccaa
tgtcggcagatttacttgaagtaccttcttgactatcctcttggggtaaaattaaaaacg
aatttggagtttataattgcacagctaaactatgaatatgaaactggaagagagtctgct
ttggaaatgatggcttaccttttccaggcattcccagaaagcattctcaaccagttctgt
ggacttctatttgtccccattgttttgctgatggttaatgatgactcccctaagtgtaaa
aaaatggctgctctggcagggaaatcccttttaagtaaaatcaatcttcagaagaaggat
ctgatgttctccttggtcactcagtggctttctaatgaaaagtctgctcacaaaagatta
ggagcccaaacatgtggtttatttgttgaagctgaaggcgttgaattcgagaggagactg
gagcctgtccttaccaccattgaaaaagaaattaaccctgttatgtttgaggatctaaaa
gaagagactgaagaaaaggcagcggatagattgctgtttagttttcttacattaattact
aagctgattaaggaatgcaacgttacccagttatcaaagtgccaagagattatggttgta
atacttgcccatgttcagtctcatttgtggtatcctcatagctgggtctggctcacctca
tcccagatctttggattgctttttgccttacaaaagccagaagatcttgtcagtaaatgg
atgaacaaaaagccgggtaaaaaagccacacaggaagcattatcttgctcgttcttagtg
gaacatctggatgtaaagatgaaagacctcgctctggctttctgccatcagctgcagtca
aaattccttgaccaggctctgggagaacagatcattaagaatttgctttttgtggccaaa
gttatttacctccttgcccctggcgtggaacctacccaaactagtaatggggaaatggat
agtgaaacaaataaggatgctgtatctggggaagaggatgatgatgctggtgatgaagag
gcaaagaaggacaaagaggatgagaaaaaagctacgctgctttggttgatgaagagactg
accatcttagcaaaaagagaagctgcctatacgccaaaaaacccattaaagagaacatgc
attttcaagttccttggagcgtgcgcagtagatctgggaaaggaaagactgaagcctttt
ctcctaaccattttaaccccccttttcagagaacttagcagcacctattcagaacaagac
ccaactttgaagaacttagcccaagaaatcatagatcttctaaagagcttaattgggctg
gaggagttttctttagcatttgcatctgtgcagaaacaagccacccagaagagggtgatg
cggaaaaaacagaaagcacttcaggctgtagcaaatcctgaagtggcagctaaaaagaag
ttgaagaaacacaaaaacaaaattgaggccaagaaaaggaagattgagtttctacgccct
ggatataaagccaagagatcccgcagccacacgctgaaagatttagcaatggtggaataa
DBGET
integrated database retrieval system
