Xenopus tropicalis (tropical clawed frog): 100125099
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Entry
100125099 CDS
T01011
Symbol
scn3a
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xtr04040
]
100125099 (scn3a)
Ion channels [BR:
xtr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100125099 (scn3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
100125099
NCBI-ProteinID:
XP_012826714
Xenbase:
XB-GENE-5812330
UniProt:
A0A8J0SWE1
LinkDB
All DBs
Position
9:70451249..70556682
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AA seq
2019 aa
AA seq
DB search
MEQPLLPPPGPDSLRLLTRESLAVLEKRFAEEKARKASQKDRRDDDDENGPKPNSDLEAG
KNLPFIYGDIPQGMVAVPMEDLDPYYSNQKTFIVLNRGKAIFRFSATSALYILTPFNPLR
RISIKILVHSLFSMLIMCTILTNCFFMTMSNPPEWTKNVEYTFTGIYTFESLVKILARGF
CLESFTFLRDPWNWLDFSVIVMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVG
ALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGHLRNKCVRWPPEYEPNITSYFNETAGL
YINVTLNPFNREEYILEETNFYFLPGTRDALLCGNSSDAGQCPKGYVCLKTGRNPNYGYT
SFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVA
MAYEEQNQATLEEAEQKEAEFQLMMEQLKKHQEEIQAAALAAETMDGSREFSGGTGYGGL
SESSSEASKPSSKSAKERRNRRKKRKQKEQGEDEKADDEKFHKSASETSIKRKGFRFSIE
GNRLTYEKKYSSPHQSRLSFRGSLFFPRRDSRASLCSFRGRGKDVGSENDFADDEHSTFE
DNESRRGSLFVPHRHGERRNSNISQTSKASRTLPVLPVNGKMHSTVDCNGVVSLLGGPSG
PTSPAGLLLPEVIIDKPASDDNGTNTENELRKRRLSSYHVSMDFLEDPILRQRALSIASN
LTNTMEELEESREKCPPCWNKFANTYLIWDCSDSWLKIKHVVNLIVMDPFVDLAITICIV
LNTLFMAMEHYPITDEFAGALNVGNLVFTGIFTAEMVFKLIALDPYYYFQVGWNIFDGVI
VSLSLMELGLSDVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAI
IVFIFAVVGMQLFGKSYKECVCKIAPDDCELPRWHMNDFFHSFLIVFRVLCGEWIETMWD
CMEVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATEDDNEMNNLQIAVAR
MHEGIAYVKRKMREFIQNAFVKKQKALEETKPLEDMQNQKDSCISNHTTVEISKEYDYLK
DGNVTTATSGIGSSVEKYIIDESDYMSFIHNPSLTVTVPIAVGESDFENLNTEEFSSESD
LEESKEKLNSSSSSEGSTVDIRPAGEGEPVPQVEVEEFQEPDACFTDGCIRRFPCCVVDV
SHGKWKQWWNLRKTCFLIVEHNWFETFIIFMILMSSGALAFEDIYIEQRKTIKIILEYAD
KVFTYIFILEMLLKWVAYGFQKYFTNAWCWLDFLIVDVSLVSLIANALGYSELGAIKSLR
TLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNMFSGKYGYC
VNYTDDVVFDYTIVNNRSQCMDLISENKTARWKNVKVNFDNVGFGYLALLQVATFKGWME
IMYAAVDSRKQEEQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQ
DIFMTEEQKKYYNAMKKLGSKKPQKPVPRPDNKFQGAVFDFVSKQPFDIAIMILICLNMV
TMMIETDDQSIETENNLYWINAVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSI
VGMFLADLIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLL
LFLVMFIYAIFGMSNFAYVKKEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNS
GAPDCDPKAEHSGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEES
AEPLGEDDFEMFYEVWEKFDSNATQFIQYVKLTDFADALDPPLRMPKPNNAQLIAMDLPM
VSGDRIHCLDVLFAFTKRVLGEGDEMDNLRQPMEERFMASNPSKASYEPITSTLRRKQEE
LAAIVIQRCYRCYALRKGIKHASFMYNQEKGKDGGSLLTRKDMLSDRLNGNSTTEKADIT
PSTTSPPSYDSVTKPDKEKHEKDKIEKEDRGKDVREHKK
NT seq
6060 nt
NT seq
+upstream
nt +downstream
nt
atggagcagccactgctacccccaccaggacctgacagccttcgactcctcaccagagaa
tctcttgctgttcttgaaaagcgctttgcagaagaaaaagccaggaaggcatcacagaag
gatcgcagagatgatgatgatgaaaatggacccaagcctaattcggacttggaagctggc
aaaaacttaccatttatatatggagacattccacagggaatggtggcagtaccaatggaa
gacctggacccatattacagcaaccaaaagacctttatagtattgaatagagggaaggca
atcttccgattcagtgccacatctgccttgtacattttaactcctttcaatcctcttaga
agaatatctataaagattttggtacattctttattcagcatgctcattatgtgcactatt
ttgactaattgcttcttcatgaccatgagtaacccaccagaatggaccaagaatgttgaa
tataccttcactggaatttatacatttgaatcacttgttaaaatacttgccagaggtttt
tgtttagaaagctttacttttctacgggatccatggaattggcttgatttcagcgtcata
gtcatggcatatgtgacagagtttgtggacctgggcaatgtctcagcattgagaacattc
agagttctccgagcattgaaaacaatatcagtcattccaggtctgaagactatcgtgggc
gcactgattcagtcggtgaagaagctttccgatgtaatgattctcacagtgttttgcctc
agtgtgtttgcactaatagggctacagcttttcatggggcacctgaggaataagtgtgta
aggtggccacctgagtatgaaccaaatatcacttcctactttaatgaaactgctggcctc
tatattaatgtaactctgaacccattcaatcgtgaagaatacatcctagaagaaactaat
ttttattttttgcctggaacgagagatgctcttctgtgtggcaacagctccgatgcaggg
cagtgtccaaaaggatatgtatgtttgaagacaggaaggaacccaaactacggctacaca
agttttgacacatttagctgggcttttttatcactgtttcggctaatgactcaggatttc
tgggaaaatctttatcaactgacactacgagctgctggtaaaacctacatgatatttttc
gttttggtgattttcctgggttctttctatttgataaacttgatcttggctgtggtggcc
atggcttatgaagagcagaatcaggcaaccttagaagaagcggagcagaaagaagcagaa
ttccagcttatgatggagcaactgaaaaaacatcaggaagaaattcaggcagcggcgcta
gcagcagaaacaatggacggttccagagagtttagtggtgggacaggctatggtgggctt
tcagaaagctcttctgaggcatcaaagccaagttccaaaagtgctaaggagagaagaaat
agaaggaaaaagagaaaacaaaaagagcagggtgaggatgagaaggcagatgatgaaaaa
ttccacaagtcggcttcagaaacgagtataaagaggaaaggctttcgtttttctatagaa
ggaaaccgactgacctatgagaagaagtactcgtccccacatcagtcccgcctcagtttc
cgtggctccctctttttcccaaggcgtgatagcagagcgagcctgtgcagcttcagaggc
cgtgggaaggatgtaggatcagaaaatgactttgcggatgatgaacacagcacatttgag
gacaatgaaagcagaagaggttcattgttcgttccacacaggcatggagagaggaggaac
agcaacataagtcaaaccagcaaggcatcaaggaccctgccggtgctgccagtgaatggg
aagatgcacagcacggtggattgcaatggagtggtctctctacttggtggcccatcaggt
ccaacatcgcctgctggactacttctgccagaggtgataatagataaaccagcttctgat
gacaatggaactaatacagagaatgaactgaggaaaagacggctcagttcgtatcatgtt
tctatggattttctggaagatccgattctcagacaaagggctctgagcattgccagcaat
ctaacaaatacaatggaagaacttgaagaatccagggaaaaatgtccaccatgctggaat
aaatttgccaatacatatctaatctgggattgcagcgactcttggctaaagataaagcat
gttgtcaacttgattgtcatggacccatttgtggatcttgcaataacaatctgcattgtt
ttgaacacgttatttatggctatggagcattacccaataaccgatgaatttgccggtgcg
ctcaatgtgggaaatttggtgtttacaggtatttttactgctgagatggttttcaagcta
attgccctagatccctattactatttccaagttggctggaacatattcgatggggttatt
gtcagtctcagcttgatggaacttggtctttcggatgtggaagggttatcagtccttcga
tctttcagattgcttcgtgtattcaaattggcgaaatcctggcctacactgaacatgctg
ataaaaattattggcaattctgtaggagctttggggaacctgactttggtgttggccatc
attgtcttcatttttgctgtggttgggatgcagctgtttggtaaaagttacaaggaatgt
gtctgcaaaattgccccagatgactgtgagcttcctcgctggcatatgaacgacttcttc
cactccttccttattgtgttccgagttctgtgtggggaatggattgaaaccatgtgggac
tgtatggaggttgcaggacaagctatgtgtcttactgtatttatgatggtgatggttatt
ggaaacctagtggtgttaaatttgtttttagctttgctgctcagctcatttagctcagac
aatctagctgctacagaggacgataatgaaatgaacaatctacaaattgcagtggccaga
atgcacgaaggaatagcctatgtgaaaaggaagatgcgggaattcatacaaaacgccttt
gtcaaaaagcaaaaagccttagaagaaaccaaacccttagaagacatgcagaaccaaaag
gacagctgcatttccaatcacaccactgtggaaataagcaaagagtatgactacctgaaa
gatggaaatgtgacaacggccaccagtggcataggcagcagtgtggaaaagtacatcata
gacgaaagcgactacatgtctttcattcataacccaagcctaactgtcactgtacctatt
gctgtgggggagtccgattttgagaatctgaacacagaggagtttagcagcgaatcagac
ttggaagaaagcaaggagaagctcaactcatccagctcatcagaaggcagtacggtggac
atcaggcctgctggggagggagagcctgttccacaggtggaggttgaagagttccaggaa
ccggatgcttgtttcacagatggctgtatcaggagatttccatgctgtgtggttgatgtc
tcacatggcaaatggaagcagtggtggaacctcagaaaaacatgtttcttaatcgtagaa
cacaactggtttgagaccttcataatctttatgattcttatgagtagtggtgccctggca
tttgaagatatctacatagaacaaagaaaaacaataaaaataattttggaatatgcggac
aaggtttttacgtacatctttatcttggaaatgcttctgaaatgggtggcatatggcttt
caaaaatatttcacaaatgcctggtgctggttggacttcttgattgttgatgtttctttg
gttagcttaatagctaatgccttgggctactcagaattaggagctattaagtcccttagg
acactaagggcattgagacctctgagggccctctcacggtttgaagggatgagggttgta
gtgaatgccctcgttggagctattccatccattatgaacgttcttctggtttgtttaata
ttttggctcatttttagcattatgggagtaaacatgttttccggaaagtatggctattgt
gtgaattacacagatgacgtagtgtttgactacacaatagttaacaataggagccaatgt
atggacctaattagtgaaaataaaacggccagatggaaaaacgtaaaagtgaattttgat
aacgtgggatttggatatcttgctttgcttcaagtggcaacattcaaaggatggatggaa
ataatgtatgcagcagttgactcaagaaagcaagaggaacagccaaaatatgaagacaat
ctgtacatgtatttgtacttcgttattttcatcatttttggatcgtttttcacactcaac
cttttcattggtgtcatcattgataattttaatcagcagaagaagaagttcggaggtcaa
gacatctttatgacggaagaacaaaaaaaatattacaatgcaatgaagaagctggggtcc
aagaaaccacaaaagcctgttccaagacctgataataaatttcaaggtgccgtctttgat
tttgtgtcgaaacaaccgtttgatatagccatcatgattctgatctgtttaaatatggta
accatgatgattgaaacagatgatcagagcatcgaaacggagaacaacttgtactggata
aatgcagttttcattgttctttttactggggagtgtgtgctcaagctgatatccctacgt
cattattacttcacaattggctggaacatatttgattttgtggttgtaattctctctata
gtaggtatgtttctggcagaccttatcgaaaaatattttgtgtcacccaccctgttcagg
gtcatccgattagctaggattggtcgtatcctgcgtctcatcaagggagctaaaggcatt
cgtactctgctgtttgccctgatgatgtcacttcctgcgttgttcaatattggtttactg
ctctttttggtgatgttcatctacgccattttcggcatgtccaactttgcctatgttaag
aaagaggctgggattgatgacatgtttaactttgagacctttggtaacagcatgatctgt
ttattccaaattacaacatctgcaggatgggatggtctgttagcgccaattcttaatagc
ggggcaccagattgcgatccaaaggcagaacattcaggaagcagtgtaaaaggagactgt
ggcaatccctctgttggcatcttcttttttgttagttatatcattatatcattcttggtt
gtagtcaacatgtatattgctgtcatcttggaaaacttcagtgttgctacggaggaaagt
gccgaacctctaggagaagatgattttgagatgttctatgaggtctgggaaaaatttgat
tcaaatgcaacacagtttatacaatacgttaaactgactgattttgctgatgcgctggat
ccgcctctccgaatgccgaaaccaaacaatgcgcagttaatcgcaatggatctgcctatg
gtaagtggggacagaattcactgccttgatgtcctgtttgcctttacaaagcgtgtgcta
ggtgaaggcgatgaaatggataacttaagacagccaatggaagaacgtttcatggcatcc
aatccttcaaaggcctcctacgaaccaatcacgtctactctacgtaggaaacaagaggag
ttagctgccatagttatccagcgctgctacagatgctacgctttaaggaaaggcataaaa
catgcctcctttatgtacaaccaggaaaagggcaaagatggagggagtctacttactagg
aaagatatgcttagcgatcgactaaatggaaactctacaacagagaaagcagacattacc
ccttcgacaacgtctcctccgtcctatgacagtgttacaaaaccagataaagaaaaacac
gaaaaagacaaaatagagaaggaagacaggggcaaagatgtcagggagcataaaaaataa
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